Stem-loop sequence gga-mir-133b

Accession

MI0001206 (change log)

Description

Gallus gallus miR-133b stem-loop

Gene family

MIPF0000029; mir-133

Literature search

22 open access papers mention gga-mir-133b
(90 sentences)

Stem-loop

   ------- u     c        ca  c  a        cgucu  u 
5'        c cugcu uggcuggu  aa gg accaagcc     uc u
          | ||||| ||||||||  || || ||||||||     ||  
3'        g gacga aucgacca  uu cc ugguuugg     ag c
   aaaaguu u     u        ac  c  c        -----  g 

Deep sequencing

19017 reads, 80 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr3: 108040385-108040468 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-133b

• gga-mir-206: chr3: 108045182-108045257 [-]
• gga-mir-133b: chr3: 108040385-108040468 [-]

Database links

• EntrezGene:
• miRBase Tracker:MI0001206

Mature sequence gga-miR-133b

• Accession: MIMAT0001138
• Sequence: 49 - uugguccccuucaaccagcua - 69
• Deep sequencing: 19016 reads, 5 experiments
• Evidence: by similarity; MI0000822
• Predicted targets:
  • TargetScanVert:gga-miR-133b
  • miRDB:gga-miR-133b

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).