Stem-loop gga-mir-18b

Accession

MI0001209

Description

Gallus gallus gga-mir-18b precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

3 open access papers mention gga-mir-18b
(4 sentences)

Sequence

1133 reads, 27 reads per million, 5 experiments

cgugguccuuguguUAAGGUGCAUCUAGUGCAGUUAgugacguagcguagaaucUACUGCCCUAAAUGCUCCUUCUGGCacaag
.......((((((((((((.((((.(((.(((((.((..(((...))).....))))))).))).)))).)))..)))))))))

Structure

cgugguc         --   U    C   U     U  ---ug   u 
       cuuguguUA  AGG GCAU UAG GCAGU Ag     acg  
       |||||||||  ||| |||| ||| ||||| ||     ||| a
       gaacaCGGU  UCC CGUA AUC CGUCA Uc     ugc  
-------         CU   U    A   C     -  uaaga   g 

Annotation confidence Not enough data

Genome context

chr4: 3995020-3995103 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from gga-mir-18b

Mature gga-miR-18b-5p

• Accession: MIMAT0001141
• Description: Gallus gallus gga-miR-18b-5p mature miRNA
• Sequence: 15 - UAAGGUGCAUCUAGUGCAGUUA - 36
• Evidence: experimental ; cloned [2], Illumina [3]

Mature gga-miR-18b-3p

• Accession: MIMAT0026516
• Description: Gallus gallus gga-miR-18b-3p mature miRNA
• Sequence: 55 - UACUGCCCUAAAUGCUCCUUCUGGC - 79
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45