Stem-loop gga-mir-106

Accession

MI0001210

Description

Gallus gallus gga-mir-106 precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

5 open access papers mention gga-mir-106
(8 sentences)

Sequence

6906 reads, 190 reads per million, 5 experiments

ccuugaguugugcAAAAGUGCUUACAGUGCAGGUAgagcucagcaccuACUGCAGUAUAAGCACUUCUGGcaugaccgugg
((.((.(((((((..(((((((((.(.(((((.(((.((...))..)))))))).).)))))))))...))))))))).))

Structure

  u  a       -AA         C G     G   -a  u 
cc ug guugugc   AAGUGCUUA A UGCAG UAg  gc  
|| || |||||||   ||||||||| | ||||| |||  || c
gg gc caguacG   UUCACGAAU U ACGUC Auc  cg  
  u  -       GUC         A G     -   ca  a 

Annotation confidence High

Genome context

chr4: 3995151-3995231 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from gga-mir-106

Mature gga-miR-106-5p

• Accession: MIMAT0001142
• Description: Gallus gallus gga-miR-106-5p mature miRNA
• Sequence: 14 - AAAAGUGCUUACAGUGCAGGUA - 35
• Evidence: experimental ; cloned [2], Illumina [3]

Mature gga-miR-106-3p

• Accession: MIMAT0026517
• Description: Gallus gallus gga-miR-106-3p mature miRNA
• Sequence: 49 - ACUGCAGUAUAAGCACUUCUGG - 70
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45