miRBase entry: gga-mir-10b

Stem-loop gga-mir-10b


Accession
MI0001216
Description
Gallus gallus gga-mir-10b precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
18 open access papers mention gga-mir-10b
(53 sentences)

Sequence

1053744 reads, 14423 reads per million, 5 experiments
cagaacguuauuacguugucuauauaUACCCUGUAGAACCGAAUUUGUgugauauucauauagucacAGAUUCGAUUCUAGGGGAAUAuauggucgaugcaaaaacuuca
..(((.(((.((.(((((.((((((((.((((.(((((.((((((((((...(((....)))..)))))))))).))))))))).)))))))).))))).)).)))))).

Structure
ca   c   a  a     u        A    G     C          uga   u 
  gaa guu uu cguug cuauauaU CCCU UAGAA CGAAUUUGUg   uau c
  ||| ||| || ||||| |||||||| |||| ||||| ||||||||||   |||  
  cuu caa aa guagc gguauAUA GGGG AUCUU GCUUAGAcac   aua a
-a   -   a  c     u        A    -     A          -ug   u 


Annotation confidence Not enough data
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Genome context
chr7: 16343590-16343699 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-10b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-10b-5p

Accession MIMAT0001148
Description Gallus gallus gga-miR-10b-5p mature miRNA
Sequence 27 - UACCCUGUAGAACCGAAUUUGU - 48
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature gga-miR-10b-3p

Accession MIMAT0026521
Description Gallus gallus gga-miR-10b-3p mature miRNA
Sequence 68 - AGAUUCGAUUCUAGGGGAAUA - 88
Evidence experimental
Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716


  2. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  3. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45