miRBase entry: gga-mir-204-2

Stem-loop gga-mir-204-2


Accession
MI0001225
Description
Gallus gallus gga-mir-204-2 precursor miRNA
Gene family
MIPF0000042; mir-204

Literature search
11 open access papers mention gga-mir-204-2
(22 sentences)

Sequence

601 reads, 10 reads per million, 5 experiments
cuacugagacugugugaccugugggcUUCCCUUUGUCAUCCUAUGCCUggagaucacagugaggcagggacagcaaagggaugcucagcugucgucucuuc
.....(((((.....(((...(((((.(((((((((..((((.(((((.............)))))))))..))))))))).)))))...))))))))...

Structure
cuacu     ugugu   cug     U         CA    A     ggaga 
     gagac     gac   ugggc UCCCUUUGU  UCCU UGCCU     u
     |||||     |||   ||||| |||||||||  |||| |||||     c
     cucug     cug   acucg agggaaacg  aggg acgga     a
--cuu     -----   ucg     u         ac    -     gugac 


Annotation confidence Not enough data
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Comments
This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context
chr10: 5628577-5628677 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-204-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-204

Accession MIMAT0001156
Description Gallus gallus gga-miR-204 mature miRNA
Sequence 27 - UUCCCUUUGUCAUCCUAUGCCU - 48
Evidence not_experimental
Database links
Predicted targets

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716