Stem-loop gga-mir-7-2

Accession

MI0001226

Description

Gallus gallus gga-mir-7-2 precursor miRNA

Gene family

MIPF0000022; mir-7

Literature search

11 open access papers mention gga-mir-7-2
(181 sentences)

Sequence

34255 reads, 440 reads per million, 5 experiments

ggacggccgcggugcccucUGGAAGACUAGUGAUUUUGUUGuuguauggcucaucccaccacaacaagucacagucugccuuagggcgcacggccccgc
((..(((((..(((((((..((.(((((.(((((((.(((((.((..((......)))).))))))))))))))))).))..))))))).)))))))..

Structure

--  ac     cg       cU  A     A       U     u  au  cu 
  gg  ggccg  gugcccu  GG AGACU GUGAUUU GUUGu gu  gg  c
  ||  |||||  |||||||  || ||||| ||||||| ||||| ||  ||   
  cc  ccggc  cgcggga  cc ucuga cacugaa caaca ca  cc  a
cg  --     -a       uu  g     -       -     c  --  cu 

Annotation confidence High

Genome context

chr10: 13134720-13134818 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-7-2

Mature gga-miR-7

• Accession: MIMAT0001157
• Description: Gallus gallus gga-miR-7 mature miRNA
• Sequence: 20 - UGGAAGACUAGUGAUUUUGUUG - 41
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None: