Stem-loop gga-mir-184

Accession

MI0001227

Description

Gallus gallus gga-mir-184 precursor miRNA

Gene family

MIPF0000059; mir-184

Literature search

3 open access papers mention gga-mir-184
(4 sentences)

Sequence

43237 reads, 648 reads per million, 5 experiments

ccgcucucacccCCUUAUCACUUUUCCAGCCCAGCuucuucgcucugacuguUGGACGGAGAACUGAUAAGGGU
...........(((((((((.((((((.(.(((((.((........))..))))).))))))).))))))))).

Structure

ccgcucucacc         C      A C     -u  uuc 
           cCCUUAUCA UUUUCC G CCAGC  uc   g
           ||||||||| |||||| | |||||  ||    
           GGGAAUAGU AAGAGG C GGUug  ag   c
----------U         C      - A     uc  ucu 

Annotation confidence Not enough data

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

chr10: 19996770-19996843 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-184

Mature gga-miR-184-3p

• Accession: MIMAT0001158
• Description: Gallus gallus gga-miR-184-3p mature miRNA
• Sequence: 53 - UGGACGGAGAACUGAUAAGGGU - 74
• Evidence: experimental ; Illumina [2]

Mature gga-miR-184-5p

• Accession: MIMAT0026526
• Description: Gallus gallus gga-miR-184-5p mature miRNA
• Sequence: 13 - CCUUAUCACUUUUCCAGCCCAGC - 35
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45