miRBase entry: gga-mir-130b

Stem-loop gga-mir-130b


Accession
MI0001239
Description
Gallus gallus gga-mir-130b precursor miRNA
Gene family
MIPF0000034; mir-130

Literature search
11 open access papers mention gga-mir-130b
(58 sentences)

Sequence

15132 reads, 188 reads per million, 5 experiments
gggcgggcugccCCUCUUUCCCUGUUGCACUACUgucacggucgcagcgagCAGUGCAAUAAUGAAAGGGCGUcagu
......((((.(.(((((((..(((((((((.((((..(....)..)).)).)))))))))..))))))).).))))

Structure
gggcgg    c C       CC         A  -  ca g 
      gcug c CUCUUUC  UGUUGCACU CU gu  c g
      |||| | |||||||  ||||||||| || ||  |  
      ugac G GGGAAAG  AUAACGUGA ga cg  g u
------    U C       UA         C  g  ac c 


Annotation confidence High
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Genome context
chr15: 399151-399227 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from gga-mir-130b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-130b-3p

Accession MIMAT0001165
Description Gallus gallus gga-miR-130b-3p mature miRNA
Sequence 52 - CAGUGCAAUAAUGAAAGGGCGU - 73
Evidence experimental
Illumina [2]

Mature gga-miR-130b-5p

Accession MIMAT0026530
Description Gallus gallus gga-miR-130b-5p mature miRNA
Sequence 13 - CCUCUUUCCCUGUUGCACUACU - 34
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716


  2. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  3. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45