Stem-loop gga-mir-181b-2

Accession

MI0001242

Description

Gallus gallus gga-mir-181b-2 precursor miRNA

Gene family

MIPF0000007; mir-181

Literature search

13 open access papers mention gga-mir-181b-2
(33 sentences)

Sequence

180573 reads, 2007 reads per million, 5 experiments

cuaauggcugcaaucAACAUUCAUUGCUGUCGGUGGGuuuucauugcuaucaacUCACUGAUCAAUGAAUGCAAAcugcggacca
....((((((((.....(((((((((..(((((((((((............)))))))))))))))))))).....))))).)))

Structure

cuaa   -     aucAA         CU           uucau 
    ugg cugca     CAUUCAUUG  GUCGGUGGGuu     u
    ||| |||||     |||||||||  |||||||||||      
    acc ggcgu     GUAAGUAAC  UAGUCACUcaa     g
----   a     cAAAC         --           cuauc 

Annotation confidence High

Genome context

chr17: 9983772-9983856 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-181b-2

Mature gga-miR-181b-5p

• Accession: MIMAT0001151
• Description: Gallus gallus gga-miR-181b-5p mature miRNA
• Sequence: 16 - AACAUUCAUUGCUGUCGGUGGG - 37
• Evidence: experimental ; cloned [2], Illumina [3]

Mature gga-miR-181b-2-3p

• Accession: MIMAT0031059
• Description: Gallus gallus gga-miR-181b-2-3p mature miRNA
• Sequence: 55 - UCACUGAUCAAUGAAUGCAAA - 75
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45