miRBase entry: gga-mir-181a-2

Stem-loop gga-mir-181a-2


Accession
MI0001243
Description
Gallus gallus gga-mir-181a-2 precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
13 open access papers mention gga-mir-181a-2
(106 sentences)

Sequence

1379744 reads, 15346 reads per million, 5 experiments
gccaucuuuggauagcuucagugAACAUUCAACGCUGUCGGUGAGUuugagaacuaagaaaaaccaucgaccguugacuguaccuugaggu
.(((....)))...(((((((.(.(((.((((((..(((((((.((((............))))))))))))))))).))).).)))))))

Structure
gccaucuuuggaua       u A   U      CU       A    gagaa 
              gcuucag g ACA UCAACG  GUCGGUG GUuu     c
              ||||||| | ||| ||||||  ||||||| ||||      
              uggaguu c ugu aguugc  cagcuac caaa     u
--------------       c a   c      --       -    aagaa 


Annotation confidence Not enough data
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Genome context
chr17: 9982132-9982222 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-181a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-181a-5p

Accession MIMAT0001168
Description Gallus gallus gga-miR-181a-5p mature miRNA
Sequence 24 - AACAUUCAACGCUGUCGGUGAGU - 46
Evidence experimental
cloned [2]
Database links
Predicted targets

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015


  3. "McBride D, Carre W, Law A, Clinton M"
    (None) None: