Stem-loop gga-mir-199-1

Accession

MI0001245

Description

Gallus gallus gga-mir-199-1 precursor miRNA

Gene family

MIPF0000040; mir-199

Literature search

7 open access papers mention gga-mir-199-1
(23 sentences)

Sequence

83269 reads, 1408 reads per million, 5 experiments

cuccacuccgucugCCCAGUGUUCAGACUACCUGUUCaggacuacgagauugUACAGUAGUCUGCACAUUGGuuaggcugugcugggauacacc
.(((((.(.(((((.(((((((.((((((((.(((.(((..........))).))))))))))).))))))).))))).).).)))).......

Structure

------c    - u c     C       U        C   U   gacu 
       ucca c c gucug CCAGUGU CAGACUAC UGU Cag    a
       |||| | | ||||| ||||||| |||||||| ||| |||     
       gggu g g cggau GGUUACA GUCUGAUG ACA guu    c
ccacaua    c u u     u       C        -   U   agag 

Annotation confidence High

Comments

Chicken has two loci predicted to express miR-199. mir-199-2 (MIR:MI0001220) is homologous to mir-199a-2 in human (MIR:MI0000281) and mouse (MIR:MI0000713). mir-199-1 (MIR:MI0001245) is homologous to mir-199b in human (MIR:MI0000282) and mouse (MIR:MI0000714). The expression of chicken miR-199 has been verified experimentally [2].

Genome context

chr17: 5571579-5571672 [+]

Mature gga-miR-199-5p

• Accession: MIMAT0001152
• Description: Gallus gallus gga-miR-199-5p mature miRNA
• Sequence: 15 - CCCAGUGUUCAGACUACCUGUUC - 37
• Evidence: experimental ; cloned [2], Northern [2]

Mature gga-miR-199-3p

• Accession: MIMAT0003721
• Description: Gallus gallus gga-miR-199-3p mature miRNA
• Sequence: 53 - UACAGUAGUCUGCACAUUGG - 72
• Evidence: experimental ; cloned [2], Northern [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 16750530
   Identification of microRNAs from different tissues of chicken embryo and adult chicken
   "Xu H, Wang X, Du Z, Li N"
   "FEBS Lett (2006) 580:3610-3616