Stem-loop sequence gga-mir-1a-1

Accession

MI0001247 (change log)

Previous IDs

gga-mir-1-1

Description

Gallus gallus miR-1a-1 stem-loop

Gene family

MIPF0000038; mir-1

Literature search

27 open access papers mention gga-mir-1a-1
(193 sentences)

Stem-loop

   u    g                gc     u  acc 
5'  gaga acauacuucuuuauau  ccaua ga   u
    |||| ||||||||||||||||  ||||| ||   g
3'  cuuu uguaugaagaaaugua  gguau cu   g
   a    a                -a     -  aac 

Deep sequencing

9112420 reads, 9.64e+04 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr20: 8315740-8315810 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-1a-1

• gga-mir-1a-1: chr20: 8315740-8315810 [+]
• gga-mir-1773: chr20: 8317045-8317122 [+]

Database links

• EntrezGene:
• RNAcentral:URS000075A743_9031
• miRBase Tracker:MI0001247

Mature sequence gga-miR-1a-1-5p

• Accession: MIMAT0031071
• Sequence: 7 - acauacuucuuuauaugcccaua - 29
• Deep sequencing: 14 reads, 1 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:gga-miR-1a-1-5p
  • miRDB:gga-miR-1a-1-5p

Mature sequence gga-miR-1a-3p

• Accession: MIMAT0001127
• Previous IDs: gga-miR-1
• Sequence: 46 - uggaauguaaagaaguaugua - 66
• Deep sequencing: 18225317 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS0000348947_9031
• Predicted targets:
  • TargetScanVert:gga-miR-1a-3p
  • miRDB:gga-miR-1a-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).