Stem-loop gga-mir-1b

Accession

MI0001254

Description

Gallus gallus gga-mir-1b precursor miRNA

Gene family

MIPF0000038; mir-1

Literature search

26 open access papers mention gga-mir-1b
(163 sentences)

Sequence

130074 reads, 1405 reads per million, 5 experiments

ACAUACUUCUUCAUAUGCCCAUAuggagucggccggcguuaUGGAAUGUUAAGAAGUAUGUAuc
(((((((((((.((((..(((((....(((....)))..))))).)))).)))))))))))...

Structure

---           C    GC     ugga   g 
   ACAUACUUCUU AUAU  CCAUA    guc g
   ||||||||||| ||||  |||||    |||  
   UGUAUGAAGAA UGUA  GGUau    cgg c
cuA           U    -A     --ug   c 

Annotation confidence Not enough data

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

chr23: 4357025-4357088 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-1b

Mature gga-miR-1b-3p

• Accession: MIMAT0001175
• Description: Gallus gallus gga-miR-1b-3p mature miRNA
• Sequence: 42 - UGGAAUGUUAAGAAGUAUGUA - 62
• Evidence: experimental ; Illumina [2]

Mature gga-miR-1b-5p

• Accession: MIMAT0026536
• Description: Gallus gallus gga-miR-1b-5p mature miRNA
• Sequence: 1 - ACAUACUUCUUCAUAUGCCCAUA - 23
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45