Stem-loop gga-mir-133c

Accession

MI0001255

Description

Gallus gallus gga-mir-133c precursor miRNA

Gene family

MIPF0000029; mir-133

Literature search

21 open access papers mention gga-mir-133c
(90 sentences)

Sequence

2987 reads, 51 reads per million, 4 experiments

ugccuuccugggGCUGGUAAAAAGGAACCAGAUCaacuacaacuggauUUGGUCCCCUUCAACCAGCUGCaguggggca
((((((.(((.(((((((..((.((.((((((((...........)))))))).)).))..))))))).))).))))))

Structure

      c   g       AA  A  A        aacu 
ugccuu cug gGCUGGU  AA GG ACCAGAUC    a
|||||| ||| |||||||  || || ||||||||    c
acgggg gaC UCGACCA  UU CC UGGUUuag    a
      u   G       AC  C  C        guca 

Annotation confidence High

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

chr23: 4357164-4357242 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-133c

Mature gga-miR-133c-3p

• Accession: MIMAT0001176
• Description: Gallus gallus gga-miR-133c-3p mature miRNA
• Sequence: 49 - UUGGUCCCCUUCAACCAGCUGC - 70
• Evidence: experimental ; Illumina [2]

Mature gga-miR-133c-5p

• Accession: MIMAT0026537
• Description: Gallus gallus gga-miR-133c-5p mature miRNA
• Sequence: 13 - GCUGGUAAAAAGGAACCAGAUC - 34
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45