Stem-loop gga-mir-30e

Accession

MI0001256

Description

Gallus gallus gga-mir-30e precursor miRNA

Gene family

MIPF0000005; mir-30

Literature search

22 open access papers mention gga-mir-30e
(61 sentences)

Sequence

3107834 reads, 38349 reads per million, 5 experiments

cggggcagucaucgcugcUGUAAACAUCCUUGACUGGaagcugugaggugucagcgggggcUUUCAGUCGGAUGUUUACAGCugcaggcugcugca
.(.(((((((...((.(((((((((((((..(((((((((((.....((....))...)))))))))))))))))))))))).)).))))))).).

Structure

c g       auc  u             UU           gugag  g 
 g ggcaguc   gc gcUGUAAACAUCC  GACUGGaagcu     gu u
 | |||||||   || |||||||||||||  |||||||||||     ||  
 c ucgucgg   cg CGACAUUUGUAGG  CUGACUUUcgg     cg c
a g       --a  u             --           --ggg  a 

Annotation confidence High

Genome context

chr23: 4946132-4946227 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-30e

Mature gga-miR-30e-5p

• Accession: MIMAT0001177
• Description: Gallus gallus gga-miR-30e-5p mature miRNA
• Sequence: 19 - UGUAAACAUCCUUGACUGG - 37
• Evidence: experimental ; cloned [2], Illumina [3]

Mature gga-miR-30e-3p

• Accession: MIMAT0026538
• Description: Gallus gallus gga-miR-30e-3p mature miRNA
• Sequence: 62 - UUUCAGUCGGAUGUUUACAGC - 82
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 16750530
   Identification of microRNAs from different tissues of chicken embryo and adult chicken
   "Xu H, Wang X, Du Z, Li N"
   "FEBS Lett (2006) 580:3610-3616


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45