miRBase entry: gga-mir-34c

Stem-loop gga-mir-34c


Accession
MI0001261
Description
Gallus gallus gga-mir-34c precursor miRNA
Gene family
MIPF0000039; mir-34

Literature search
10 open access papers mention gga-mir-34c
(28 sentences)

Sequence

41522 reads, 771 reads per million, 5 experiments
agccugguuaccAGGCAGUGUAGUUAGCUGAUUGCcaccaggaccAAUCACUAACCACACAGCCAGGuaaaaag
...((..(((((.(((.((((.(((((.((((((((....))..))))))))))).)))).))).)))))..))

Structure
agc  gg     A   A    A     C      --  a 
   cu  uuacc GGC GUGU GUUAG UGAUUG  Cc c
   ||  ||||| ||| |||| ||||| ||||||  ||  
   ga  aauGG CCG CACA CAAUC ACUAAc  gg c
---  aa     A   A    C     -      ca  a 


Annotation confidence High
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Comments
This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context
chr24: 5539871-5539944 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-34c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-34c-5p

Accession MIMAT0001180
Description Gallus gallus gga-miR-34c-5p mature miRNA
Sequence 13 - AGGCAGUGUAGUUAGCUGAUUGC - 35
Evidence experimental
Illumina [2]

Mature gga-miR-34c-3p

Accession MIMAT0026541
Description Gallus gallus gga-miR-34c-3p mature miRNA
Sequence 46 - AAUCACUAACCACACAGCCAGG - 67
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45