Stem-loop gga-mir-34c

Accession

MI0001261

Description

Gallus gallus gga-mir-34c precursor miRNA

Literature search

10 open access papers mention gga-mir-34c
(28 sentences)

Sequence

41520 reads, 762 reads per million, 5 experiments

agccugguuaccAGGCAGUGUAGUUAGCUGAUUGCcaccaggaccAAUCACUAACCACACAGCCAGGuaaaaag
...((..(((((.(((.((((.(((((.((((((((....))..))))))))))).)))).))).)))))..))

Structure

agc  gg     A   A    A     C      --  a 
   cu  uuacc GGC GUGU GUUAG UGAUUG  Cc c
   ||  ||||| ||| |||| ||||| ||||||  ||  
   ga  aauGG CCG CACA CAAUC ACUAAc  gg c
---  aa     A   A    C     -      ca  a 

Annotation confidence High

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

chr24: 5539871-5539944 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-34c

Mature gga-miR-34c-5p

• Accession: MIMAT0001180
• Description: Gallus gallus gga-miR-34c-5p mature miRNA
• Sequence: 13 - AGGCAGUGUAGUUAGCUGAUUGC - 35
• Evidence: experimental ; Illumina [2]

Mature gga-miR-34c-3p

• Accession: MIMAT0026541
• Description: Gallus gallus gga-miR-34c-3p mature miRNA
• Sequence: 46 - AAUCACUAACCACACAGCCAGG - 67
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45