miRBase entry: gga-mir-135a-3

Stem-loop gga-mir-135a-3


Accession
MI0001264
Description
Gallus gallus gga-mir-135a-3 precursor miRNA
Gene family
MIPF0000028; mir-135

Literature search
8 open access papers mention gga-mir-135a-3
(10 sentences)

Sequence

23755 reads, 262 reads per million, 5 experiments
cccucugcuguggucUAUGGCUUUUUAUUCCUAUGUGAuugcuuuuccuaacucAUGUAGGGCGAAAAGCCAUGGGcuacucaggggagggacucc
((((((.(((((((((((((((((((..((((((((((..............)))))))))).)))))))))))))))))..)).)))))).....

Structure
-----      g  --                 AU          uugcuu 
     cccucu cu  guggucUAUGGCUUUUU  UCCUAUGUGA      u
     |||||| ||  |||||||||||||||||  ||||||||||       
     gggagg ga  caucGGGUACCGAAAAG  GGGAUGUAcu      u
ccuca      g  cu                 -C          caaucc 


Annotation confidence High
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Genome context
chr26: 2124003-2124098 [-]

Database links

Mature gga-miR-135a-5p

Accession MIMAT0001099
Description Gallus gallus gga-miR-135a-5p mature miRNA
Sequence 16 - UAUGGCUUUUUAUUCCUAUGUGA - 38
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature gga-miR-135a-3-3p

Accession MIMAT0031038
Description Gallus gallus gga-miR-135a-3-3p mature miRNA
Sequence 55 - AUGUAGGGCGAAAAGCCAUGGG - 76
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45