Stem-loop sequence gga-mir-31

Accession

MI0001276 (change log)

Description

Gallus gallus miR-31 stem-loop

Gene family

MIPF0000064; mir-31

Literature search

12 open access papers mention gga-mir-31
(52 sentences)

Stem-loop

   uucuuucaug    g u      ga     g             -u   aac 
5'           caga c ggaggg  ggcaa auguuggcauagc  guu   c
             |||| | ||||||  ||||| |||||||||||||  |||    
3'           gucu g ccuuuc  cuguu uacaaccguaucg  caa   u
   ----------    - u      ua     a             uc   aaa 

Deep sequencing

1700 reads, 80 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chrZ: 78512252-78512345 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:
• miRBase Tracker:MI0001276

Mature sequence gga-miR-31-5p

• Accession: MIMAT0001189
• Sequence: 25 - aggcaagauguuggcauagcug - 46
• Deep sequencing: 1655 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:gga-miR-31-5p
  • miRDB:gga-miR-31-5p

Mature sequence gga-miR-31-3p

• Accession: MIMAT0026549
• Sequence: 61 - ugcuaugccaacauauugucauc - 83
• Deep sequencing: 45 reads, 4 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:gga-miR-31-3p
  • miRDB:gga-miR-31-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. " McBride D, Carre W, Law A, Clinton M Unpublished.
3. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).