miRBase entry: osa-MIR437

Stem-loop osa-MIR437


Accession
MI0001688
Description
Oryza sativa osa-MIR437 precursor miRNA
Gene family
MIPF0000746; MIR437

Literature search
8 open access papers mention osa-MIR437
(14 sentences)

Sequence

108 reads, 83 reads per million, 2 experiments
cccucuguuucauauuguauuguguuuuaguuuuguuguaagucaaaauucuuuuacuuugaccaaguuuguaguaaaauaauuaacaucuaaaauaccaaauaaauacacuauugagacauauuucuugguugauuuuucuauaaacuuggucAAAGUUAGAGAAGUUUGACUUaggacaaaacuaaacaccuuaugauauggaacagaggg
(((((((((((((((((((..((((((.(((((((((.(((((((((.((((((.(((((((((((((((((((.(((((................(((((..(((((..((....))...))))).)))))..))))).))))))))))))))))))).)))))).))))))))).)))))))))))))))..)))))))))))))))))))

Structure
                   uu      u         g         a      u                   u     aauuaacaucuaaaau     au     -ca  a 
cccucuguuucauauugua  guguuu aguuuuguu uaagucaaa uucuuu acuuugaccaaguuuguag aaaau                accaa  aaaua   cu u
|||||||||||||||||||  |||||| ||||||||| ||||||||| |||||| ||||||||||||||||||| |||||                |||||  |||||   ||  
gggagacaagguauaguau  cacaaa ucaaaacag aUUCAGUUU AAGAGA UGAAAcugguucaaauauc uuuua                ugguu  uuuau   ga u
                   uc      -         g         G      U                   u     --------------gu     -c     aca  g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr2: 17050336-17050548 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR437
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR437

Accession MIMAT0001586
Description Oryza sativa osa-miR437 mature miRNA
Sequence 155 - AAAGUUAGAGAAGUUUGACUU - 175
Evidence experimental
cloned [1], Illumina [2]
Database links

References

  1. PubMed ID: 19903869
    Rice MicroRNA effector complexes and targets
    "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
    "Plant Cell (2009) 21:3421-3435

  2. PubMed ID: 15805478
    Cloning and characterization of microRNAs from rice
    "Sunkar R, Girke T, Jain PK, Zhu JK"
    "Plant Cell (2005) 17:1397-1411