Stem-loop osa-MIR390

Accession

MI0001690

Description

Oryza sativa osa-MIR390 precursor miRNA

Gene family

MIPF0000101; MIR390

Literature search

37 open access papers mention osa-MIR390
(198 sentences)

Sequence

478 reads, 337 reads per million, 2 experiments

gguauggaacaauccuugAAGCUCAGGAGGGAUAGCGCCucgaaaucaaacuaggCGCUAUCUAUCCUGAGCUCCaugguuuguucuuacc
((((.(((((((.((.((.(((((((((.(((((((((((.(........).))))))))))).))))))))).)).)).)))))))))))

Structure

    u       u  u  A         G           c aaa 
ggua ggaacaa cc ug AGCUCAGGA GGAUAGCGCCu g   u
|||| ||||||| || || ||||||||| ||||||||||| |    
ccau ucuuguu gg aC UCGAGUCCU UCUAUCGCgga c   c
    -       u  u  C         A           u aaa 

Annotation confidence High

Genome context

Chr3: 34275140-34275230 [-]

Mature osa-miR390-5p

• Accession: MIMAT0001588
• Description: Oryza sativa osa-miR390-5p mature miRNA
• Sequence: 19 - AAGCUCAGGAGGGAUAGCGCC - 39
• Evidence: experimental ; cloned [1]

Mature osa-miR390-3p

• Accession: MIMAT0022888
• Description: Oryza sativa osa-miR390-3p mature miRNA
• Sequence: 56 - CGCUAUCUAUCCUGAGCUCC - 75
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15805478
   Cloning and characterization of microRNAs from rice
   "Sunkar R, Girke T, Jain PK, Zhu JK"
   "Plant Cell (2005) 17:1397-1411


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176