miRBase entry: osa-MIR439d

Stem-loop osa-MIR439d


Accession
MI0001694
Description
Oryza sativa osa-MIR439d precursor miRNA
Gene family
MIPF0000092; MIR439

Literature search
2 open access papers mention osa-MIR439d
(2 sentences)

Sequence

68 reads, 48 reads per million, 2 experiments
ccaccuacccugucgaacucacguaguucgacauguaccugucgaacugugguuguucgauagguaucccUGUCGAACCGCGGUUGUUCGAuagggug
.....(((((((((((((...(((.((((((((.(((((((((((((.......)))))))))))))...)))))))).)))...)))))))))))))

Structure
ccacc             uca   a        --u             ug 
     uacccugucgaac   cgu guucgaca   guaccugucgaac  u
     |||||||||||||   ||| ||||||||   |||||||||||||  g
     gugggauAGCUUG   GCG CAAGCUGU   uauggauagcuug  g
-----             UUG   C        ccc             uu 


Annotation confidence Not enough data
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Genome context
Chr3: 13698311-13698408 [+]

Database links

Mature osa-miR439d

Accession MIMAT0001592
Description Oryza sativa osa-miR439d mature miRNA
Sequence 71 - UGUCGAACCGCGGUUGUUCGA - 91
Evidence experimental
cloned [1]
Database links

References

  1. PubMed ID: 15805478
    Cloning and characterization of microRNAs from rice
    "Sunkar R, Girke T, Jain PK, Zhu JK"
    "Plant Cell (2005) 17:1397-1411