Stem-loop gma-MIR156c

Accession

MI0001772

Description

Glycine max gma-MIR156c precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

40 open access papers mention gma-MIR156c
(168 sentences)

Sequence

acuugaccacuaggcuuaucucuuuccguuucugagcaugcauacucauucacagcaucaaaaugcacagauccugauggagauugcacagggcaggugaugcuagauugcaccauacucaacucuggacuuugugauugaagugUUGACAGAAGAUAGAGAGCACaaccugagucaaaggaucc
..(((((...((((....(((((.((...(((((..((.((((..(((.((((((..((....((((....(((....)))...))))(((((.(((((.(((......))).))).))...)))))))..)))))).))).)))))).))))))).)))))......)))).))))).......

Structure

-----ac     cac    --cuua     u  cgu     ag  u    ac   u      ca  aaaaugcacagauccugauggagauugca     --c  -   a   ua 
       uugac   uagg      ucucu uc   uucug  ca gcau  uca ucacag  uc                             caggg   ag gug ugc  g
       |||||   ||||      ||||| ||   |||||  || ||||  ||| ||||||  ||                             |||||   || ||| |||   
       aacug   gucc      AGAGA AG   AAGAC  GU Ugug  agu aguguu  ag                             gucuc   uc uac acg  a
ccuagga     --a    aaCACG     U  ---     -A  -    -a   u      uc  -----------------------------     aac  a   c   uu 

Annotation confidence Not enough data

Genome context

chr16: 5359989-5360173 [-]

Mature gma-miR156c

• Accession: MIMAT0001674
• Description: Glycine max gma-miR156c mature miRNA
• Sequence: 146 - UUGACAGAAGAUAGAGAGCAC - 166
• Evidence: experimental ; 454 [1]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160