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Novel and nodulation-regulated microRNAs in soybean roots |
|
|---|---|
| PubMed ID | 18402695 |
| Authors | Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O |
| Journal | BMC Genomics |
| Volume | 9 |
| Pages | 160 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| gma-MIR156d | MI0001770 | None | chr8 | 3896578 | 3896728 | + | - |
| gma-MIR156c | MI0001772 | None | chr16 | 5359989 | 5360173 | - | - |
| gma-MIR159a | MI0001773 | None | chr9 | 40266722 | 40266935 | + | - |
| gma-MIR160a | MI0001774 | None | chr10 | 44431708 | 44431826 | - | - |
| gma-MIR166a | MI0001775 | None | chr16 | 1934911 | 1935056 | - | - |
| gma-MIR166b | MI0001776 | None | chr8 | 282785 | 282951 | - | - |
| gma-MIR167a | MI0001777 | None | chr19 | 42073549 | 42073667 | + | - |
| gma-MIR167b | MI0001778 | None | chr2 | 14838068 | 14838188 | - | - |
| gma-MIR168a | MI0001779 | None | chr9 | 44068673 | 44068797 | - | - |
| gma-MIR172a | MI0001780 | None | chr12 | 6139598 | 6139756 | - | - |
| gma-MIR172b | MI0001781 | None | chr13 | 41847312 | 41847464 | - | - |
| gma-MIR319a | MI0001782 | None | chr5 | 39506583 | 39506789 | - | - |
| gma-MIR319b | MI0001783 | None | chr8 | 1650575 | 1650782 | - | - |
| gma-MIR156a | MI0001784 | None | chr17 | 5885507 | 5885628 | - | - |
| gma-MIR396a | MI0001785 | None | chr13 | 27525230 | 27525369 | - | - |
| gma-MIR396b | MI0001786 | None | chr13 | 27517027 | 27517152 | + | - |
| gma-MIR319c | MI0001789 | None | chr14 | 45231920 | 45232140 | - | - |
| gma-MIR169a | MI0001791 | None | chr9 | 38336014 | 38336134 | + | - |
| gma-MIR159b | MI0007206 | None | chr7 | 5424789 | 5424974 | - | - |
| gma-MIR159c | MI0007207 | None | chr16 | 2830034 | 2830218 | - | - |
| gma-MIR162a | MI0007208 | None | chr6 | 20376062 | 20376163 | - | - |
| gma-MIR164a | MI0007209 | None | chr19 | 49681250 | 49681344 | + | - |
| gma-MIR167c | MI0007210 | None | chr7 | 39734580 | 39734954 | + | - |
| gma-MIR169b | MI0007211 | None | chr2 | 10504688 | 10504870 | + | - |
| gma-MIR169c | MI0007212 | None | chr9 | 5343659 | 5343773 | + | - |
| gma-MIR171a | MI0007213 | None | chr12 | 8478656 | 8478757 | + | - |
| gma-MIR390a | MI0007214 | None | chr3 | 6398854 | 6398958 | - | - |
| gma-MIR390b | MI0007215 | None | chr14 | 46392430 | 46392532 | + | - |
| gma-MIR393a | MI0007216 | None | chr11 | 32101395 | 32101514 | + | - |
| gma-MIR171b | MI0007217 | None | chr4 | 50115835 | 50115926 | + | - |
| gma-MIR482a | MI0007218 | None | chr2 | 7873063 | 7873157 | + | - |
| gma-MIR1507a | MI0007219 | None | chr13 | 27036567 | 27036673 | + | - |
| gma-MIR1508a | MI0007220 | None | chr16 | 33378856 | 33378950 | + | - |
| gma-MIR1509a | MI0007221 | None | chr17 | 9813056 | 9813166 | + | - |
| gma-MIR1510a | MI0007222 | None | chr16 | 31887382 | 31887474 | + | - |
| gma-MIR1511 | MI0007223 | None | chr18 | 20910835 | 20910933 | + | - |
| gma-MIR1512a | MI0007224 | None | chr18 | 56521611 | 56521705 | + | - |
| gma-MIR1513a | MI0007225 | None | chr7 | 43192197 | 43192289 | + | - |
| gma-MIR1514a | MI0007226 | None | chr7 | 43120760 | 43120858 | - | - |
| gma-MIR1514b | MI0007227 | None | chr17 | 1491521 | 1491629 | + | - |
| gma-MIR1515a | MI0007228 | None | chr1 | 49411416 | 49411560 | + | - |
| gma-MIR1516a | MI0007229 | None | chr3 | 45034824 | 45034934 | + | - |
| gma-MIR1517 | MI0007230 | None | chr14 | 43676665 | 43677061 | + | - |
| gma-MIR1518 | MI0007231 | None | chr9 | 7525122 | 7525259 | + | - |
| gma-MIR1519 | MI0007232 | None | chr7 | 11379900 | 11380166 | + | - |
| gma-MIR1520d | MI0007233 | None | chr7 | 124349 | 124459 | - | - |
| gma-MIR1536 | MI0007234 | None | chr15 | 44547119 | 44547359 | - | - |
| gma-MIR1520a | MI0007235 | None | chr14 | 17975535 | 17975684 | - | - |
| gma-MIR1521a | MI0007236 | None | chr11 | 12131319 | 12131508 | - | - |
| gma-MIR1522 | MI0007237 | None | chr4 | 13894953 | 13895140 | + | - |
| gma-MIR1523a | MI0007240 | None | chr2 | 12591029 | 12591123 | - | - |
| gma-MIR1524 | MI0007241 | None | chr8 | 3718555 | 3718890 | + | - |
| gma-MIR1525 | MI0007242 | None | None | None | - | ||
| gma-MIR1520b | MI0007243 | None | chr20 | 41755528 | 41755656 | - | - |
| gma-MIR1526 | MI0007244 | None | chr16 | 6139320 | 6139493 | + | - |
| gma-MIR1527 | MI0007245 | None | None | None | - | ||
| gma-MIR1528 | MI0007246 | None | chr8 | 4502473 | 4502737 | - | - |
| gma-MIR1529 | MI0007248 | None | chr1 | 54737797 | 54737997 | - | - |
| gma-MIR1530 | MI0007249 | None | chr10 | 41788173 | 41788321 | + | - |
| gma-MIR1531 | MI0007250 | None | chr20 | 41470544 | 41470658 | + | - |
| gma-MIR1532 | MI0007251 | None | chr13 | 43766192 | 43766343 | + | - |
| gma-MIR1520c | MI0007252 | None | chr17 | 37603731 | 37603870 | + | - |
| gma-MIR1533 | MI0007253 | None | chr20 | 47549866 | 47550005 | - | - |
| gma-MIR1534 | MI0007254 | None | chr6 | 37671785 | 37672027 | - | - |
| gma-MIR1535a | MI0007257 | None | chr19 | 43989978 | 43990073 | + | - |
| gma-MIR167d | MI0010571 | None | chr10 | 2648276 | 2648396 | + | - |
| gma-MIR396c | MI0010572 | None | chr13 | 45239131 | 45239247 | + | - |
| gma-MIR1507b | MI0010573 | None | chr17 | 5926147 | 5926244 | + | - |
| gma-MIR1510b | MI0010575 | None | chr2 | 6675723 | 6675816 | + | - |
| gma-MIR167e | MI0010725 | None | chr20 | 39002092 | 39002200 | + | - |
| gma-MIR167f | MI0010726 | None | chr10 | 47144841 | 47144949 | - | - |
| gma-MIR172c | MI0010727 | None | chr18 | 2979182 | 2979334 | + | - |
| gma-MIR172d | MI0010728 | None | chr14 | 5659819 | 5659968 | + | - |
| gma-MIR172e | MI0010729 | None | chr11 | 31482550 | 31482702 | - | - |
| gma-MIR1509b | MI0010730 | None | chr5 | 1350441 | 1350549 | + | - |
| gma-MIR396d | MI0016503 | None | chr17 | 8782240 | 8782347 | - | - |
| gma-MIR482b | MI0016527 | None | chr20 | 36454144 | 36454212 | + | - |
| gma-MIR167g | MI0016548 | None | chr10 | 39602156 | 39602233 | + | - |
| gma-MIR169d | MI0016571 | None | chr15 | 14186946 | 14187033 | + | - |
| gma-MIR172f | MI0016574 | None | chr11 | 26905395 | 26905527 | + | - |
| gma-MIR171c | MI0016575 | None | chr7 | 43625963 | 43626066 | - | - |
| gma-MIR169e | MI0016576 | None | chr15 | 14210033 | 14210152 | + | - |
| gma-MIR159d | MI0016581 | None | None | None | - | ||
| gma-MIR396e | MI0016586 | None | chr17 | 35037484 | 35037597 | - | - |
| gma-MIR160b | MI0017821 | None | chr20 | 41668766 | 41668855 | + | - |
| gma-MIR160c | MI0017822 | None | chr19 | 43999110 | 43999200 | - | - |
| gma-MIR160d | MI0017823 | None | chr13 | 25235556 | 25235646 | - | - |
| gma-MIR160e | MI0017824 | None | chr3 | 39255811 | 39255900 | - | - |
| gma-MIR162b | MI0017825 | None | chr5 | 1431946 | 1432055 | + | - |
| gma-MIR164b | MI0017826 | None | chr10 | 1558481 | 1558570 | + | - |
| gma-MIR164c | MI0017827 | None | chr3 | 5194846 | 5194935 | - | - |
| gma-MIR164d | MI0017828 | None | chr10 | 38618021 | 38618110 | + | - |
| gma-MIR166c | MI0017829 | None | chr7 | 4502830 | 4502959 | - | - |
| gma-MIR166d | MI0017830 | None | chr20 | 44227240 | 44227349 | - | - |
| gma-MIR166e | MI0017831 | None | chr4 | 47978621 | 47978730 | + | - |
| gma-MIR166f | MI0017832 | None | chr10 | 41798829 | 41798938 | + | - |
| gma-MIR166g | MI0017833 | None | chr10 | 2913323 | 2913432 | - | - |
| gma-MIR166h | MI0017834 | None | chr8 | 14920990 | 14921179 | + | - |
| gma-MIR168b | MI0017835 | None | chr1 | 48944581 | 48944690 | - | - |
| gma-MIR169f | MI0017836 | None | chr10 | 40892477 | 40892646 | - | - |
| gma-MIR169g | MI0017837 | None | chr17 | 4591798 | 4591927 | - | - |
| gma-MIR171d | MI0017838 | None | chr1 | 49981490 | 49981599 | - | - |
| gma-MIR171e | MI0017839 | None | chr5 | 38773113 | 38773202 | - | - |
| gma-MIR171f | MI0017840 | None | chr15 | 8505075 | 8505164 | - | - |
| gma-MIR171g | MI0017841 | None | chr16 | 5376139 | 5376228 | - | - |
| gma-MIR319d | MI0017842 | None | chr15 | 40974346 | 40974535 | - | - |
| gma-MIR319e | MI0017843 | None | chr14 | 47276795 | 47276984 | + | - |
| gma-MIR319f | MI0017844 | None | chr10 | 48913063 | 48913157 | - | - |
| gma-MIR482c | MI0017851 | None | chr18 | 57154765 | 57154854 | - | - |
| gma-MIR1507c | MI0017854 | None | chr9 | 17134380 | 17134469 | - | - |
| gma-MIR171h | MI0017905 | None | chr6 | 10887944 | 10888094 | - | - |
| gma-MIR171i | MI0017907 | None | chr6 | 49520830 | 49520980 | - | - |
| gma-MIR169h | MI0017912 | None | chr9 | 5330689 | 5330839 | + | - |
| gma-MIR167h | MI0017914 | None | chr10 | 47144854 | 47144942 | + | - |
| gma-MIR169i | MI0017918 | None | chr13 | 21505359 | 21505509 | + | - |
| gma-MIR396f | MI0017919 | None | chr15 | 556336 | 556486 | - | - |
| gma-MIR396g | MI0017921 | None | None | None | - | ||
| gma-MIR167i | MI0017926 | None | chr20 | 39002038 | 39002188 | - | - |
| gma-MIR171j | MI0018641 | None | chr2 | 4065759 | 4065911 | - | - |
| gma-MIR397a | MI0018645 | None | chr8 | 4644313 | 4644420 | - | - |
| gma-MIR397b | MI0018646 | None | chr13 | 35595158 | 35595279 | - | - |
| gma-MIR159e | MI0018657 | None | chr7 | 9561934 | 9562144 | - | - |
| gma-MIR159f | MI0018658 | None | chr16 | 2819636 | 2819815 | - | - |
| gma-MIR162c | MI0018659 | None | chr17 | 9894786 | 9894904 | + | - |
| gma-MIR166i | MI0018660 | None | chr2 | 14544488 | 14544584 | + | - |
| gma-MIR166j | MI0018661 | None | chr15 | 3706979 | 3707146 | - | - |
| gma-MIR169j | MI0018662 | None | chr2 | 43801693 | 43801777 | - | - |
| gma-MIR169k | MI0018663 | None | chr9 | 5312564 | 5312668 | + | - |
| gma-MIR169l | MI0018664 | None | chr14 | 5435482 | 5435595 | + | - |
| gma-MIR169m | MI0018665 | None | chr13 | 21492366 | 21492488 | + | - |
| gma-MIR169n | MI0018666 | None | chr15 | 14166062 | 14166176 | + | - |
| gma-MIR171k | MI0018667 | None | chr13 | 27458231 | 27458328 | + | - |
| gma-MIR172g | MI0018668 | None | chr10 | 31996846 | 31996959 | - | - |
| gma-MIR172h | MI0018669 | None | chr10 | 44054389 | 44054479 | + | - |
| gma-MIR172i | MI0018670 | None | chr15 | 2892841 | 2893001 | - | - |
| gma-MIR172j | MI0018671 | None | chr20 | 42009499 | 42009588 | - | - |
| gma-MIR319g | MI0018672 | None | chr2 | 40809293 | 40809490 | + | - |
| gma-MIR319h | MI0018673 | None | chr2 | 42629369 | 42629554 | + | - |
| gma-MIR319i | MI0018674 | None | chr4 | 49476554 | 49476747 | + | - |
| gma-MIR319j | MI0018675 | None | chr11 | 1382971 | 1383149 | + | - |
| gma-MIR319k | MI0018676 | None | chr11 | 28073920 | 28074105 | + | - |
| gma-MIR319l | MI0018677 | None | chr17 | 9165413 | 9165514 | - | - |
| gma-MIR319m | MI0018678 | None | chr18 | 4298047 | 4298236 | - | - |
| gma-MIR396h | MI0018679 | None | chr14 | 13772743 | 13772890 | + | - |
| gma-MIR396i | MI0018680 | None | chr17 | 8774041 | 8774175 | + | - |
| gma-MIR482d | MI0018681 | None | chr10 | 49165318 | 49165412 | - | - |
| gma-MIR167j | MI0018686 | None | chr20 | 45890458 | 45890535 | + | - |
| gma-MIR171l | MI0018687 | None | chr17 | 8830894 | 8830991 | - | - |
| gma-MIR393b | MI0019715 | None | chr1 | 42280842 | 42280957 | - | - |
| gma-MIR171m | MI0019745 | None | chr12 | 8432426 | 8432558 | + | - |
| gma-MIR172k | MI0019746 | None | chr12 | 33517484 | 33517617 | + | - |
| gma-MIR171n | MI0019747 | None | chr12 | 35463985 | 35464118 | + | - |
| gma-MIR171o | MI0019749 | None | chr13 | 31863180 | 31863281 | + | - |
| gma-MIR172l | MI0019750 | None | chr13 | 43075243 | 43075420 | + | - |
| gma-MIR169o | MI0019751 | None | chr13 | 21496986 | 21497084 | + | - |
| gma-MIR319n | MI0019752 | None | chr13 | 28262485 | 28262580 | - | - |
| gma-MIR171p | MI0019753 | None | chr13 | 40504444 | 40504575 | - | - |
| gma-MIR169p | MI0019756 | None | chr15 | 14192081 | 14192178 | + | - |
| gma-MIR396j | MI0019759 | None | chr16 | 31530670 | 31530803 | - | - |
| gma-MIR171q | MI0019760 | None | chr17 | 1001169 | 1001277 | + | - |
| gma-MIR169r | MI0019762 | None | chr17 | 4587059 | 4587161 | - | - |
| gma-MIR169s | MI0019763 | None | chr17 | 4594138 | 4594257 | - | - |
| gma-MIR396k | MI0019764 | None | None | None | - | ||
| gma-MIR166k | MI0019768 | None | chr19 | 36827774 | 36827945 | - | - |
| gma-MIR482e | MI0019772 | None | None | None | - | ||
| gma-MIR171r | MI0019774 | None | chr4 | 50116148 | 50116249 | + | - |
| gma-MIR169t | MI0019778 | None | chr5 | 38544108 | 38544233 | + | - |
| gma-MIR171s | MI0019779 | None | chr6 | 10887673 | 10887774 | - | - |
| gma-MIR166l | MI0019780 | None | chr6 | 45680685 | 45680863 | - | - |
| gma-MIR171t | MI0019781 | None | chr6 | 49564865 | 49564981 | - | - |
| gma-MIR171u | MI0019785 | None | chr8 | 923816 | 923917 | - | - |
| gma-MIR166m | MI0019792 | None | chr9 | 36469526 | 36469701 | + | - |
| gma-MIR169u | MI0019794 | None | chr9 | 45847295 | 45847435 | - | - |
| gma-MIR160f | MI0021682 | None | chr10 | 4750208 | 4750304 | - | - |
| gma-MIR164e | MI0021683 | None | chr2 | 1535426 | 1535520 | + | - |
| gma-MIR164f | MI0021684 | None | chr3 | 43533079 | 43533181 | + | - |
| gma-MIR164g | MI0021685 | None | chr3 | 44895293 | 44895384 | + | - |
| gma-MIR164h | MI0021686 | None | chr9 | 49456787 | 49456944 | - | - |
| gma-MIR164i | MI0021687 | None | chr18 | 49506475 | 49506631 | + | - |
| gma-MIR164j | MI0021688 | None | chr19 | 48278744 | 48278831 | + | - |
| gma-MIR164k | MI0021689 | None | chr20 | 46912450 | 46912558 | - | - |
| gma-MIR166n | MI0021690 | None | chr5 | 38037266 | 38037408 | - | - |
| gma-MIR166o | MI0021691 | None | chr6 | 13019417 | 13019561 | - | - |
| gma-MIR166p | MI0021692 | None | chr3 | 37501582 | 37501703 | - | - |
| gma-MIR166q | MI0021693 | None | chr4 | 47978878 | 47979029 | + | - |
| gma-MIR166r | MI0021694 | None | KQ474607.1 | 1988 | 2142 | - | - |
| gma-MIR166s | MI0021695 | None | chr7 | 10246809 | 10246932 | + | - |
| gma-MIR166t | MI0021696 | None | chr9 | 39698809 | 39698944 | - | - |
| gma-MIR166u | MI0021697 | None | chr4 | 33862799 | 33862939 | + | - |
| gma-MIR169v | MI0021699 | None | chr13 | 15982021 | 15982322 | - | - |
| gma-MIR393c | MI0021704 | None | chr2 | 44047954 | 44048066 | - | - |
| gma-MIR393d | MI0021705 | None | chr10 | 25990586 | 25990708 | - | - |
| gma-MIR393e | MI0021706 | None | chr14 | 5137829 | 5137969 | + | - |
| gma-MIR393f | MI0021707 | None | chr18 | 2419300 | 2419417 | - | - |
| gma-MIR393g | MI0021708 | None | chr20 | 26105756 | 26105874 | - | - |
| gma-MIR393h | MI0021709 | None | chr9 | 34250214 | 34250360 | + | - |
| gma-MIR393i | MI0021710 | None | chr10 | 46430313 | 46430450 | + | - |
| gma-MIR393j | MI0021711 | None | chr16 | 34388224 | 34388377 | + | - |
| gma-MIR393k | MI0021712 | None | chr20 | 39779945 | 39780086 | - | - |
| gma-MIR319o | MI0031039 | None | chr6 | 11459824 | 11460018 | - | - |
| gma-MIR319p | MI0031041 | None | chr6 | 22789766 | 22789844 | + | - |
| gma-MIR167k | MI0031050 | None | chr2 | 307525 | 307604 | - | - |
| gma-MIR319q | MI0031060 | None | None | None | - | ||
| gma-MIR167l | MI0033446 | None | chr3 | 37301792 | 37301901 | + | - |
| gma-MIR169w | MI0033468 | None | chr9 | 5348169 | 5348283 | + | - |