Stem-loop gma-MIR1524

Accession

MI0007241

Description

Glycine max gma-MIR1524 precursor miRNA

Sequence

gcgacuuauuggaguucauucuucgcacucucucggaaaccacuuguuuccaaucaucuaaucagacgauagcagacucaagaaagacguuuccuucccagauccuucuagaccauuugcaaaccgucuccuuccccgaauccauucuccaaacccucgauccuugaggagcuccaccaccgugacggcgcuccggucuccgccgucaauugugccgucgcgguggagcaugagcgucuucaugagucugaaagggaauuauaggaacuacuuuccugauuagguuauuggaaacaagugguuucCGAGUCCGAGGAAGGAACUCCaacgcccaac
(((.....(((((((((.(((((((......(((((((((((((((((((((((.((((((((.........((((((((.(((.(((((((.......(((....)))((((............))))........(((....))).......((((((...)))))).((((((((...((((((((((..((((....))))......))))))))))))))))))..)))))))))).))))))))..((((((...(((...))).)))))))))))))).)))))))))))))))))))))))..))))))).)))))))))))).....

Structure

-----   acuua         a       cacucu                       c        ------------------agacgauag        a   a       ccuucccagauccuucuagaccauuugcaaaccgucuccuuccccgaauccauucuccaaacccucgauccuugagga        acc          ----uc    c 
     gcg     uuggaguuc uucuucg      cucggaaaccacuuguuuccaau aucuaauc                           cagacuca gaa gacguuu                                                                              gcuccacc   gugacggcgc      cggu u
     |||     ||||||||| |||||||      ||||||||||||||||||||||| ||||||||                           |||||||| ||| |||||||                                                                              ||||||||   ||||||||||      ||||  
     cgc     aaCCUCAAG AAGGAGC      GAGCcuuuggugaacaaagguua uggauuag                           gucugagu cuu cugcgag                                                                              cgaggugg   cgcugccgug      gccg c
caacc   -----         G       ----CU                       u        uccuuucaucaaggauauuaagggaaa        a   -       ----------------------------------------------------------------------------ua        ---          uuaacu    c 

Annotation confidence Not enough data

Genome context

chr8: 3718555-3718890 [+]

Mature gma-miR1524

• Accession: MIMAT0007385
• Description: Glycine max gma-miR1524 mature miRNA
• Sequence: 306 - CGAGUCCGAGGAAGGAACUCC - 326
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160