Stem-loop gma-MIR167a

Accession

MI0001777

Description

Glycine max gma-MIR167a precursor miRNA

Literature search

29 open access papers mention gma-MIR167a
(211 sentences)

Sequence

6094759 reads, 13513.0 reads per million, 178 experiments

gaaguucgcaaaggaaaaagUGAAGCUGCCAGCAUGAUCUAccuuugguuagagagcucaagagugcuaacccugacuaGGUCAUGCUGUGACAGCCUCACUCcuuccuauuuggggac
...((((.((((((((..(((((.(((((((((((((((((.....((((((...(((....))).)))))).....)))))))))))).).)))).)))))..)))))..))).))))

Structure

gaa    g   --     aa     A    - -            ccuuu      aga   c 
   guuc caa  aggaa  agUGA GCUG C CAGCAUGAUCUA     gguuag   gcu a
   |||| |||  |||||  ||||| |||| | ||||||||||||     ||||||   |||  
   cagg guu  uccuu  UCACU CGAC G GUCGUACUGGau     ccaauc   uga a
---    g   ua     cC     C    A U            caguc      --g   g 

Annotation confidence High

Genome context

chr19: 42073549-42073667 [+]

Mature gma-miR167a-5p

• Accession: MIMAT0001679
• Description: Glycine max gma-miR167a-5p mature miRNA
• Sequence: 21 - UGAAGCUGCCAGCAUGAUCUA - 41
• Evidence: experimental ; 454 [1]

Mature gma-miR167a-3p

• Accession: MIMAT0054005
• Description: Glycine max gma-miR167a-3p mature miRNA
• Sequence: 80 - GGUCAUGCUGUGACAGCCUCACUC - 103
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160