Stem-loop sequence gma-MIR319b

Accession

MI0001783 (change log)

Description

Glycine max miR319b stem-loop

Gene family

MIPF0000010; MIR159

Literature search

17 open access papers mention gma-MIR319b
(45 sentences)

Stem-loop

   uaaguccuaag   c  --u   a     uu          cu      u   aa     uu      a -  g   ac       uc  aa         aaag ga 
5'            cga gg   aag gagcu  cuucagucca  uauggg gac  uaaga  ucaauu g cu ccg  ucauuca  ca  ugcugagug    c  a
              ||| ||   ||| |||||  ||||||||||  |||||| |||  |||||  |||||| | || |||  |||||||  ||  |||||||||    |  g
3'            guu uc   uuc cucga  gaagucaggu  augucc uug  auucu  aguuaa c ga ggc  aguaagu  gu  acgacucau    g  a
   ---ucuucuaa   u  uuu   c     gg          uc      u   -a     -u      a a  g   gu       ga  aa         ---a aa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr8: 1650575-1650782 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001783

Mature sequence gma-miR319b

• Accession: MIMAT0001685
• Sequence: 170 - uuggacugaagggagcuccc - 189
• Evidence: experimental; 454 [1]

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2. PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots" Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O BMC Genomics. 9:160(2008).