Stem-loop gma-MIR156a

Accession

MI0001784

Description

Glycine max gma-MIR156a precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

41 open access papers mention gma-MIR156a
(182 sentences)

Sequence

cacaccagauugagagaggcUGACAGAAGAGAGUGAGCACaugcuagugguauuuguaugagggcauacaauugcgggugcgugcucacuucucuaucugucagcuucccauucuuuuuuac
......(((.((.(.(((((((((((((((((((((((((..((.(.(.(((.(((((((....))))))).))).).))))))))))).))))).))))))))))))))).))).......

Structure

-cacacc   u  a a            -     -        au  u g g   u       a 
       aga ug g gaggcUGACAGA AGAGA GUGAGCAC  gc a u gua uuguaug g
       ||| || | |||||||||||| ||||| ||||||||  || | | ||| |||||||  
       ucu ac c cuucgacugucu ucucu cacucgug  cg u g cgu aacauac g
cauuuuu   u  - -            a     u        --  - g g   u       g 

Annotation confidence Not enough data

Genome context

chr17: 5885507-5885628 [-]

Mature gma-miR156a

• Accession: MIMAT0001686
• Description: Glycine max gma-miR156a mature miRNA
• Sequence: 21 - UGACAGAAGAGAGUGAGCAC - 40
• Evidence: experimental ; 454 [1,3]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160


3. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506