Stem-loop dre-mir-16a

Accession

MI0001894

Description

Danio rerio dre-mir-16a precursor miRNA mir-15

Gene
family

RF00455; mir-15

Literature search

12 open access papers mention dre-mir-16a
(22 sentences)

Sequence

767855 reads, 1007.0 reads per million, 297 experiments

ccuuccucgcuuUAGCAGCACGUAAAUAUUGGUGuguuauagucaaggccaaccCCAAUAUUAUGUGUGCUGCUUCaguaaggcagg
(((.(((.(((..(((((((((((((((((((.(((((........)))..)).)))))))).)))))))))))..))).))).)))

Structure

   u   c   uU           -        U  --   aua 
ccu ccu gcu  AGCAGCACGUA AAUAUUGG Gu  guu   g
||| ||| |||  ||||||||||| |||||||| ||  |||    
gga gga uga  UCGUCGUGUGU UUAUAACC ca  cgg   u
   c   a   CU           A        c  ac   aac 

Annotation confidence High

Genome context

chr15: 1543857-1543943 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-16a

Mature dre-miR-16a-5p

• Accession: MIMAT0001774
• Description: Danio rerio dre-miR-16a-5p mature miRNA
• Sequence: 13 - UAGCAGCACGUAAAUAUUGGUG - 34
• Evidence: experimental ; cloned [1]

Mature dre-miR-16a-3p

• Accession: MIMAT0060865
• Description: Danio rerio dre-miR-16a-3p mature miRNA
• Sequence: 55 - CCAAUAUUAUGUGUGCUGCUUC - 76
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293