Stem-loop sequence dre-mir-23b

Accession

MI0001917 (change log)

Description

Danio rerio miR-23b stem-loop

Gene family

MIPF0000027; mir-23

Literature search

12 open access papers mention dre-mir-23b
(58 sentences)

Stem-loop

       cu      --          -  c      ---gug  u 
5' gugg  gugugg  guucuuggca ug ugauuu      ac g
   ||||  ||||||  |||||||||| || ||||||      ||  
3' cacc  cacacc  uagggaccgu ac acuaaa      ug u
       au      au          u  -      aaaaaa  a 

Deep sequencing

31718 reads, 3.74e+03 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr10: 15954579-15954659 [+]
• Overlapping transcripts:

  antisense

  OTTDART00000043259 ; si:dkey-3h23.2-002; exon 3

  OTTDART00000043258 ; si:dkey-3h23.2-001; exon 4

  ENSDART00000142357 ; si:dkey-3h23.2-002; exon 3

  ENSDART00000144692 ; si:dkey-3h23.2-001; exon 4

Clustered miRNAs

< 10kb from dre-mir-23b

• dre-mir-23b: chr10: 15954579-15954659 [+]
• dre-mir-27d: chr10: 15954727-15954815 [+]
• dre-mir-24-1: chr10: 15960835-15960914 [+]

Database links

• EntrezGene:mir23b
• EntrezGene:mir23b
• RNAcentral:URS000075C60B_7955
• miRBase Tracker:MI0001917

Mature sequence dre-miR-23b

• Accession: MIMAT0001791
• Sequence: 51 - aucacauugccagggauuacca - 72
• Deep sequencing: 31707 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000047D6C7_7955
• Predicted targets:
  • TargetScanFish:dre-miR-23b

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).