miRBase entry: dre-mir-153a

Stem-loop dre-mir-153a


Accession
MI0002021
Description
Danio rerio dre-mir-153a precursor miRNA
Gene family
MIPF0000050; mir-153

Literature search
5 open access papers mention dre-mir-153a
(146 sentences)

Sequence

1782 reads, 211 reads per million, 11 experiments
gguugccaguGUCAUUUUUGUGAUGUUGCAGCUaguuauaugagcccagUUGCAUAGUCACAAAAGUGAUCauuggaaacu
((((.(((((((((((((((((((..(((((((.(((.....)))..)))))))..))))))))))))).)))))).))))

Structure
    g      -             GU       -a   a 
gguu ccaguG UCAUUUUUGUGAU  UGCAGCU  guu u
|||| |||||| |||||||||||||  |||||||  ||| a
ucaa gguuaC AGUGAAAACACUG  ACGUUga  cga u
    a      U             AU       cc   g 


Annotation confidence High
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Genome context
chr7: 40485510-40485590 [+]

Database links

Mature dre-miR-153a-3p

Accession MIMAT0001849
Description Danio rerio dre-miR-153a-3p mature miRNA
Sequence 50 - UUGCAUAGUCACAAAAGUGAUC - 71
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-153a-5p

Accession MIMAT0031978
Description Danio rerio dre-miR-153a-5p mature miRNA
Sequence 11 - GUCAUUUUUGUGAUGUUGCAGCU - 33
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293