miRBase entry: ptr-mir-30c-2

Stem-loop ptr-mir-30c-2


Accession
MI0002923
Description
Pan troglodytes ptr-mir-30c-2 precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
2 open access papers mention ptr-mir-30c-2
(2 sentences)

Sequence

agauacUGUAAACAUCCUACACUCUCAGCuguggaaaguaagaaagcugggagaaggcuguuuacucuuucu
(((....(((((((.(((...(((((((((..............))))))))).))).)))))))....)))

Structure
   uacU       U   ACA         guggaa 
aga    GUAAACA CCU   CUCUCAGCu      a
|||    ||||||| |||   |||||||||       
ucu    cauuugu gga   gagggucga      g
   uucu       c   --a         aagaau 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr6: 74025074-74025145 [-]

Database links

Mature ptr-miR-30c

Accession MIMAT0002614
Description Pan troglodytes ptr-miR-30c mature miRNA
Sequence 7 - UGUAAACAUCCUACACUCUCAGC - 29
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24