miRBase entry: osa-MIR535

Stem-loop osa-MIR535


Accession
MI0003505
Description
Oryza sativa osa-MIR535 precursor miRNA
Gene family
MIPF0000136; MIR535

Literature search
20 open access papers mention osa-MIR535
(32 sentences)

Sequence

5553 reads, 3861 reads per million, 2 experiments
ggcggUGACAACGAGAGAGAGCACGCcggugcggcggucacggugagccggcccgcggcggcguaccugcGUGCUUUCUCCCGUUGUCACUgcc
(((((((((((((.((((((((((((.((((((.(.(((.(((.(......)))).))).))))))).)))))))))))).)))))))))))))

Structure
             A            c      g g   a   u ag 
ggcggUGACAACG GAGAGAGCACGC ggugcg c guc cgg g  c
||||||||||||| |||||||||||| |||||| | ||| ||| |   
ccgUCACUGUUGC CUCUUUCGUGcg ccaugc g cgg gcc c  c
             C            u      - g   c   - gg 


Annotation confidence Not enough data
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Genome context
Chr11: 16290530-16290623 [-]

Database links

Mature osa-miR535-5p

Accession MIMAT0003142
Description Oryza sativa osa-miR535-5p mature miRNA
Sequence 6 - UGACAACGAGAGAGAGCACGC - 26
Evidence experimental
cloned [1]
Database links

Mature osa-miR535-3p

Accession MIMAT0022927
Description Oryza sativa osa-miR535-3p mature miRNA
Sequence 71 - GUGCUUUCUCCCGUUGUCACU - 91
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 16146523
    Cloning and characterization of micro-RNAs from moss
    "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
    "Plant J (2005) 43:837-848

  2. PubMed ID: 21901091
    Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
    Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
    PLoS Pathog (2011) 7:e1002176