Stem-loop hsa-mir-548a-1

Accession

MI0003593

Symbol

HGNC: MIR548A1

Description

Homo sapiens hsa-mir-548a-1 precursor miRNA

Literature search

56 open access papers mention hsa-mir-548a-1
(171 sentences)

Sequence

6110 reads, 41 reads per million, 68 experiments

ugcagggagguauuaaguuggugcaaaaguaauugugauuuuugccauuaaaaguaacgaCAAAACUGGCAAUUACUUUUGCaccaaaccugguauu
........(((((((.((((((((((((((((((((.(.(((((.(.(((....))).).))))).).))))))))))))))))).))).)))))))

Structure

ugcaggga       a   -                 g u     c a   a 
        gguauua guu ggugcaaaaguaauugu a uuuug c uua a
        ||||||| ||| ||||||||||||||||| | ||||| | |||  
        uuauggu caa ccaCGUUUUCAUUAACG U AAAAC g aau a
--------       c   a                 G C     a c   g 

Annotation confidence Low

Genome context

chr6: 18571784-18571880 [+]

Disease association

hsa-mir-548a-1 is associated with one or more human diseases in the Human microRNA Disease Database

Mature hsa-miR-548a-3p

• Accession: MIMAT0003251
• Description: Homo sapiens hsa-miR-548a-3p mature miRNA
• Sequence: 61 - CAAAACUGGCAAUUACUUUUGC - 82
• Evidence: experimental ; SAGE [1], cloned [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16505370
   The colorectal microRNAome
   "Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE"
   "Proc Natl Acad Sci U S A (2006) 103:3687-3692