Stem-loop sequence hsa-mir-548b

Accession

MI0003596 (change log)

Symbol

HGNC:MIR548B

Description

Homo sapiens miR-548b stem-loop

Gene family

MIPF0000317; mir-548

Literature search

47 open access papers mention hsa-mir-548b
(155 sentences)

Stem-loop

   cagacuauauau                       u      g   uuuau 
5'             uuagguuggcgcaaaaguaauug gguuuu gcc     u
               ||||||||||||||||||||||| |||||| |||      
3'             aauccaaccguguuuucguugac ccaaga cgg     u
   -------uucau                       u      a   uaacu 

Deep sequencing

21165 reads, 35.9 reads per million, 153 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr6: 119069047-119069143 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR548B
• HGNC:MIR548B
• RNAcentral:URS000075E69F_9606
• miRBase Tracker:MI0003596

Mature sequence hsa-miR-548b-5p

• Accession: MIMAT0004798
• Sequence: 25 - aaaaguaauugugguuuuggcc - 46
• Deep sequencing: 9708 reads, 152 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS000059E19C_9606
• Predicted targets:
  • TargetMiner:hsa-miR-548b-5p
  • TargetScanVert:hsa-miR-548b-5p
  • miRDB:hsa-miR-548b-5p
  • microrna.org:hsa-miR-548b-5p

Mature sequence hsa-miR-548b-3p

• Accession: MIMAT0003254
• Previous IDs: hsa-miR-548b
• Sequence: 61 - caagaaccucaguugcuuuugu - 82
• Deep sequencing: 11400 reads, 123 experiments
• Evidence: experimental; SAGE [1], cloned [2]
• Database links:
  • RNAcentral:URS000039A25B_9606
• Predicted targets:
  • TargetMiner:hsa-miR-548b-3p
  • TargetScanVert:hsa-miR-548b-3p
  • miRDB:hsa-miR-548b-3p
  • microrna.org:hsa-miR-548b-3p

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).