Stem-loop sequence hsa-mir-616

Accession

MI0003629 (change log)

Symbol

HGNC:MIR616

Description

Homo sapiens miR-616 stem-loop

Gene family

MIPF0000507; mir-616

Literature search

6 open access papers mention hsa-mir-616
(7 sentences)

Stem-loop

   -------u     a       ca      a                -  gac 
5'         uaggu auuccuc  cucaaa cccuucagugacuucc au   a
           ||||| |||||||  |||||| |||||||||||||||| ||    
3'         gucca uaaggag  gaguuu gggagguuacugaagg ua   u
   aaaauuuu     g       ac      -                a  aag 

Deep sequencing

1183 reads, 1.43 reads per million, 140 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr12: 57519163-57519259 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000412251 ; STAT6-002; intron 1

  OTTHUMT00000412376 ; STAT6-010; intron 1

  ENST00000556155 ; STAT6-002; intron 1

  ENST00000553499 ; STAT6-010; intron 1

Clustered miRNAs

< 10kb from hsa-mir-616

• hsa-mir-616: chr12: 57519163-57519259 [-]
• hsa-mir-6758: chr12: 57512688-57512750 [+]

Database links

• EntrezGene:MIR616
• HGNC:MIR616
• RNAcentral:URS00006DC233_9606
• miRBase Tracker:MI0003629

Mature sequence hsa-miR-616-5p

• Accession: MIMAT0003284
• Previous IDs: hsa-miR-616;hsa-miR-616*
• Sequence: 16 - acucaaaacccuucagugacuu - 37
• Deep sequencing: 753 reads, 123 experiments
• Evidence: experimental; SAGE [1]
• Database links:
  • RNAcentral:URS00005D986D_9606
• Predicted targets:
  • TargetMiner:hsa-miR-616-5p
  • TargetScanVert:hsa-miR-616-5p
  • miRDB:hsa-miR-616-5p
  • microrna.org:hsa-miR-616-5p

Mature sequence hsa-miR-616-3p

• Accession: MIMAT0004805
• Previous IDs: hsa-miR-616
• Sequence: 56 - agucauuggaggguuugagcag - 77
• Deep sequencing: 418 reads, 79 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS00005E3F32_9606
• Predicted targets:
  • TargetMiner:hsa-miR-616-3p
  • TargetScanVert:hsa-miR-616-3p
  • miRDB:hsa-miR-616-3p
  • microrna.org:hsa-miR-616-3p

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).