Stem-loop ppt-MIR1219a

Accession

MI0004718

Description

Physcomitrella patens ppt-MIR1219a precursor miRNA

Gene family

MIPF0000346; MIR1219

Sequence

ugaaguguggacgauggagagucagccuCUUCCUGCCUCUCACUAGCUUcaucccuuccucccuaaauuuuagucugggagggaaggagcuauugguggucaggaauagcgcacccuucauuuauccacacuuca
(((((((((((.(((((((.((..((((.((((((((.(.((.(((((((.((((((((...((((...))))...)))))))).))))))).))).)).)))))).)).)))).)))))))..)))))))))))

Structure

           -c       a  ca  -  C      -  U U  C       a        ucc    a 
ugaagugugga  gauggag gu  gc cu UUCCUG CC C CA UAGCUUc ucccuucc   cuaa  
|||||||||||  ||||||| ||  || || |||||| || | || ||||||| ||||||||   |||| u
acuucacaccu  uuacuuc ca  cg ga aaggac gg g gu aucgagg agggaggg   gauu  
           au       c  --  c  u      u  u -  u       a        ucu    u 

Annotation confidence Not enough data

Genome context

Chr04: 10210326-10210460 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1219a

Mature ppt-miR1219a

• Accession: MIMAT0003908
• Description: Physcomitrella patens ppt-miR1219a mature miRNA
• Sequence: 29 - CUUCCUGCCUCUCACUAGCUU - 49
• Evidence: experimental ; Northern [1], 454 [2]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769


2. PubMed ID: 16824179
   Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
   "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
   "Plant J (2006) 47:25-37