Stem-loop ppt-MIR1219b

Accession

MI0004719

Description

Physcomitrella patens ppt-MIR1219b precursor miRNA

Gene family

MIPF0000346; MIR1219

Sequence

cuCUUCCUGCCUCUCACUAGCUUcaucccuucgaacccgaagguacuaagguaaggaacuauugggaagcaggaacag
...(((((((.(((((.(((.(((...((((((....))))))(((....)))..)))))).))))).)))))))...

Structure

cuC       C     C   C   ---------auc      a 
   UUCCUGC UCUCA UAG UUc            ccuucg a
   ||||||| ||||| ||| |||            ||||||  
   aaggacg agggu auc aag            ggaagc c
gac       a     u   -   gaauggaaucau      c 

Annotation confidence Not enough data

Genome context

Chr04: 10210127-10210204 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1219b

Mature ppt-miR1219b

• Accession: MIMAT0003909
• Description: Physcomitrella patens ppt-miR1219b mature miRNA
• Sequence: 3 - CUUCCUGCCUCUCACUAGCUU - 23
• Evidence: experimental ; Northern [1], 454 [2]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769


2. PubMed ID: 16824179
   Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
   "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
   "Plant J (2006) 47:25-37