miRBase entry: gga-mir-144

Stem-loop gga-mir-144


Accession
MI0004996
Description
Gallus gallus gga-mir-144 precursor miRNA
Gene family
MIPF0000093; mir-144

Literature search
7 open access papers mention gga-mir-144
(26 sentences)

Sequence

36181 reads, 441 reads per million, 5 experiments
cccgccgcccugggcuGGAUAUCAUCAUAUACUGUAAGuucacuaugagacaCUACAGUAUAGAUGAUGUACUCcccugggcugc
...((.((((.(((..(.((((((((.(((((((((.((((.......)).))))))))))))))))))).)..))).)))).))

Structure
ccc  c    u   cu G        A         A  -  ac 
   gc gccc ggg  G AUAUCAUC UAUACUGUA Gu uc  u
   || |||| |||  | |||||||| ||||||||| || ||  a
   cg cggg ccc  C UGUAGUAG AUAUGACAU Ca ag  u
---  u    u   CU A        -         -  c  ag 


Annotation confidence High
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Genome context
chr19: 5863191-5863275 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-144
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-144-3p

Accession MIMAT0003776
Description Gallus gallus gga-miR-144-3p mature miRNA
Sequence 53 - CUACAGUAUAGAUGAUGUACUC - 74
Evidence experimental
cloned [1], Northern [1], Illumina [2]

Mature gga-miR-144-5p

Accession MIMAT0026644
Description Gallus gallus gga-miR-144-5p mature miRNA
Sequence 17 - GGAUAUCAUCAUAUACUGUAAG - 38
Evidence experimental
Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 16750530
    Identification of microRNAs from different tissues of chicken embryo and adult chicken
    "Xu H, Wang X, Du Z, Li N"
    "FEBS Lett (2006) 580:3610-3616

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45