Stem-loop sequence mdv1-mir-M5

Accession MI0005097
Previous IDs mdv-mir-M5
Description Mareks disease virus miR-M5 stem-loop
Stem-loop 
u  ug   c   u        au  -     guuuaa 
 ca  aac gua gcgaucac  ug acacg      a
 ||  ||| ||| ||||||||  || |||||       
 gu  uug cau ugcuggug  au ugugc      a
g  gu   u   c        cu  g     auacau
Get sequence
Genome context
Coordinates (EMBL:AF243438.1) Overlapping transcripts
AF243438.1: 7945-8019 [-]
intergenic
AF243438.1: 133601-133675 [+]
intergenic
Clustered miRNAs
< 10kb from mdv1-mir-M5
mdv1-mir-M1 AF243438.1: 136864-136939 [+]
mdv1-mir-M31 AF243438.1: 136539-136607 [+]
mdv1-mir-M11 AF243438.1: 136050-136114 [+]
mdv1-mir-M4 AF243438.1: 134363-134428 [+]
mdv1-mir-M2 AF243438.1: 134223-134296 [+]
mdv1-mir-M3 AF243438.1: 134075-134144 [+]
mdv1-mir-M12 AF243438.1: 133888-133949 [+]
mdv1-mir-M5 AF243438.1: 133601-133675 [+]
mdv1-mir-M9 AF243438.1: 133369-133438 [+]
mdv1-mir-M9 AF243438.1: 8182-8251 [-]
mdv1-mir-M5 AF243438.1: 7945-8019 [-]
mdv1-mir-M12 AF243438.1: 7671-7732 [-]
mdv1-mir-M3 AF243438.1: 7476-7545 [-]
mdv1-mir-M2 AF243438.1: 7324-7397 [-]
mdv1-mir-M4 AF243438.1: 7192-7257 [-]
mdv1-mir-M11 AF243438.1: 5506-5570 [-]
mdv1-mir-M31 AF243438.1: 5013-5081 [-]
mdv1-mir-M1 AF243438.1: 4681-4756 [-]

Mature sequence mdv1-miR-M5-5p

Accession MIMAT0005802
Previous IDs mdv1-miR-M5*
Sequence

6 -  

aaccguaugcgaucacauugac

 - 27

Get sequence
Evidence experimental; Northern [2], cloned [3], Solexa [4]

Mature sequence mdv1-miR-M5-3p

Accession MIMAT0003926
Previous IDs mdv-miR-M5;mdv1-miR-M5
Sequence

47 -  

uguguaucguggucgucuacugu

 - 69

Get sequence
Evidence experimental; cloned [1-3], Northern [1-2], Solexa [4]

References

1
PMID:16912324 "Marek's disease virus encodes MicroRNAs that map to meq and the latency-associated transcript" Burnside J, Bernberg E, Anderson A, Lu C, Meyers BC, Green PJ, Jain N, Isaacs G, Morgan RW J Virol. 80:8778-8786(2006).
2
PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
3
PMID:18430245 "Deep sequencing of chicken microRNAs" Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW BMC Genomics. 9:185(2008).
4
PMID:18842708 "Sequence conservation and differential expression of Marek's disease virus microRNAs" Morgan R, Anderson A, Bernberg E, Kamboj S, Huang E, Lagasse G, Isaacs G, Parcells M, Meyers BC, Green PJ, Burnside J J Virol. 82:12213-12220(2008).