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Deep sequencing of chicken microRNAs |
|
|---|---|
| PubMed ID | 18430245 |
| Authors | Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW |
| Journal | BMC Genomics |
| Volume | 9 |
| Pages | 185 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| mdv1-mir-M1 | MI0005093 | None | AF243438.1 | 4681 | 4756 | - | - |
| mdv1-mir-M2 | MI0005094 | None | AF243438.1 | 7324 | 7397 | - | - |
| mdv1-mir-M3 | MI0005095 | None | AF243438.1 | 7476 | 7545 | - | - |
| mdv1-mir-M4 | MI0005096 | None | AF243438.1 | 7192 | 7257 | - | - |
| mdv1-mir-M5 | MI0005097 | None | AF243438.1 | 7945 | 8019 | - | - |
| mdv1-mir-M6 | MI0005098 | None | AF243438.1 | 142321 | 142440 | + | - |
| mdv1-mir-M7 | MI0005099 | None | AF243438.1 | 142501 | 142620 | + | - |
| mdv1-mir-M8 | MI0005100 | None | AF243438.1 | 142201 | 142320 | + | - |
| gga-mir-1329 | MI0006979 | 708 | chr3 | 97355529 | 97355623 | + | High |
| gga-mir-1416 | MI0006981 | 62 | chrZ | 34922631 | 34922719 | + | High |
| mdv1-mir-M10 | MI0006988 | None | AF243438.1 | 142625 | 142693 | + | - |
| mdv1-mir-M12 | MI0006990 | None | AF243438.1 | 7671 | 7732 | - | - |
| gga-mir-1451 | MI0007054 | 93 | chr3 | 76267732 | 76267841 | + | High |
| gga-mir-460b | MI0007055 | 1253 | chr4 | 2714081 | 2714170 | + | High |
| gga-mir-1452 | MI0007056 | 1 | chrZ | 66442096 | 66442173 | + | - |
| gga-mir-1453 | MI0007058 | 0 | chr20 | 1424639 | 1424712 | - | - |
| gga-mir-1454 | MI0007059 | 13 | chr3 | 56963007 | 56963106 | - | - |
| gga-mir-1456 | MI0007061 | 26 | chrZ | 44897354 | 44897463 | - | - |
| gga-mir-1457 | MI0007062 | 179 | chr2 | 137176405 | 137176491 | - | - |
| gga-mir-1458 | MI0007063 | 0 | chr9 | 10673202 | 10673311 | + | - |
| gga-mir-1459 | MI0007064 | 0 | chrZ | 66445287 | 66445371 | + | - |
| gga-mir-1460 | MI0007065 | None | chr1 | 6954124 | 6954222 | - | - |
| gga-mir-216c | MI0007066 | 18 | chr3 | 323485 | 323570 | + | - |
| gga-mir-1462 | MI0007067 | 2 | chr4 | 8548164 | 8548273 | - | - |
| gga-mir-1463 | MI0007068 | 0 | chr5 | 10200271 | 10200380 | - | - |
| gga-mir-1464 | MI0007069 | 0 | chr15 | 11505276 | 11505385 | + | - |
| gga-mir-1465 | MI0007070 | 0 | chr17 | 8654138 | 8654247 | + | - |
| gga-mir-1466 | MI0007071 | 0 | chr24 | 4173823 | 4173932 | + | - |
| gga-mir-1467-1 | MI0007072 | 2 | chr2 | 136000986 | 136001095 | - | - |
| mdv1-mir-M31 | MI0008337 | None | AF243438.1 | 5013 | 5081 | - | - |
| gga-mir-1467-2 | MI0023550 | 2 | None | None | - | ||
| gga-mir-1306 | MI0007057 | 13 | chr15 | 1294136 | 1294204 | + | High |
| gga-mir-29a | MI0001166 | 670 | chr1 | 3434776 | 3434864 | + | High |
| gga-mir-29b-1 | MI0001167 | 238 | chr1 | 3433759 | 3433839 | + | High |
| gga-let-7i | MI0001168 | 753 | chr1 | 33060797 | 33060880 | + | High |
| gga-let-7a-3 | MI0001171 | 73726 | chr1 | 71291481 | 71291556 | + | High |
| gga-let-7b | MI0001172 | 13203 | chr1 | 71292310 | 71292394 | + | High |
| gga-let-7c | MI0001174 | 12632 | chr1 | 99018794 | 99018877 | + | High |
| gga-mir-125b-2 | MI0001175 | 6293 | chr1 | 99051079 | 99051168 | + | High |
| gga-mir-222a | MI0001177 | 415 | chr1 | 110650030 | 110650127 | + | High |
| gga-mir-221 | MI0001178 | 930 | chr1 | 110650534 | 110650632 | + | High |
| gga-mir-16-1 | MI0001185 | 392 | chr1 | 169399051 | 169399134 | - | High |
| gga-mir-196-2 | MI0001190 | 1901 | chr2 | 32707474 | 32707567 | - | - |
| gga-mir-16-2 | MI0001222 | 387 | chr9 | 22276898 | 22276991 | - | High |
| gga-mir-7-2 | MI0001226 | 440 | chr10 | 13134720 | 13134818 | - | High |
| gga-let-7g | MI0001230 | 4570 | chr12 | 2971911 | 2971993 | - | High |
| gga-let-7d | MI0001232 | 130 | chr12 | 6091058 | 6091160 | - | High |
| gga-let-7f | MI0001233 | 33796 | chr12 | 6092103 | 6092189 | - | High |
| gga-let-7a-1 | MI0001234 | 72969 | chr12 | 6092517 | 6092606 | - | High |
| gga-let-7a-2 | MI0001259 | 72699 | chr24 | 3343196 | 3343267 | + | High |
| gga-let-7j | MI0001262 | 73377 | chr26 | 1639928 | 1640010 | - | - |
| gga-let-7k | MI0001263 | 40055 | chr26 | 1640128 | 1640210 | - | High |
| gga-mir-29b-2 | MI0001266 | 253 | chr26 | 2699722 | 2699801 | - | High |
| gga-mir-196-1 | MI0001268 | 2028 | chr27 | 3775036 | 3775130 | + | High |
| gga-mir-196-3 | MI0001282 | 2177 | chr33 | 1025337 | 1025444 | + | - |
| gga-mir-21 | MI0004994 | 34970 | chr19 | 7376247 | 7376343 | + | High |
| gga-mir-460a | MI0004998 | 424 | chr2 | 3692580 | 3692669 | + | High |
| gga-mir-16c | MI0007563 | 2035 | chr4 | 4071445 | 4071515 | - | - |
| gga-mir-222b | MI0022373 | 100 | None | None | High | ||
| gga-mir-196-4 | MI0023559 | 1901 | None | None | - | ||
| gga-mir-196-5 | MI0023560 | 1901 | None | None | - | ||
| gga-mir-125b-1 | MI0029337 | 6039 | chr24 | 3360814 | 3360905 | + | High |
| gga-let-7l-1 | MI0040762 | 1540 | AADN04005513.1 | 10244 | 10320 | - | - |
| gga-let-7l-2 | MI0040769 | 1540 | AADN04020204.1 | 2008 | 2088 | - | - |