Stem-loop gga-mir-29b-1

Accession

MI0001167

Description

Gallus gallus gga-mir-29b-1 precursor miRNA

Literature search

14 open access papers mention gga-mir-29b-1
(55 sentences)

Sequence

20021 reads, 238 reads per million, 5 experiments

ccucaggaAGCUGGUUUCAUAUGGUGGUUUAGAuuuaacuauucauugucUAGCACCAUUUGAAAUCAGUGUUcuuggagg
(((((((((((((((((((.((((((..((((((.............)))))))))))).)))))))))).))))).))))

Structure

    -     -          U      GU      uuaac 
ccuc aggaA GCUGGUUUCA AUGGUG  UUAGAu     u
|||| ||||| |||||||||| ||||||  ||||||     a
ggag uucUU UGACUAAAGU UACCAC  GAUcug     u
    g     G          U      --      uuacu 

Annotation confidence High

Genome context

chr1: 3433759-3433839 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-29b-1

Mature gga-miR-29b-3p

• Accession: MIMAT0001097
• Description: Gallus gallus gga-miR-29b-3p mature miRNA
• Sequence: 51 - UAGCACCAUUUGAAAUCAGUGUU - 73
• Evidence: experimental ; cloned [2], Illumina [3]

Mature gga-miR-29b-1-5p

• Accession: MIMAT0026488
• Description: Gallus gallus gga-miR-29b-1-5p mature miRNA
• Sequence: 9 - AGCUGGUUUCAUAUGGUGGUUUAGA - 33
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45