Stem-loop sequence sme-mir-1c

AccessionMI0005130 (change log)
DescriptionSchmidtea mediterranea miR-1c stem-loop
Stem-loop
          gag   c          a      gaa     uc 
5' guuacgu   gug acauuauuca aacauu   ucaca  g
   |||||||   ||| |||||||||| ||||||   |||||   
3' uaaugca   cac ugugauaagu uuguaa   ggugu  a
          -ga   -          g      ---     ca 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (WUSTL3.1) Overlapping transcripts
Contig577: 106527-106605 [+]
intergenic
Clustered miRNAs
< 10kb from sme-mir-1c
sme-mir-1bContig577: 101727-101808 [+]
sme-mir-1cContig577: 106527-106605 [+]
Database links

Mature sequence sme-miR-1c-5p

Accession MIMAT0012092
Previous IDssme-miR-1c*
Sequence

14 - 

cacauuauucaaaacauugaaucac

 - 38

Get sequence
Evidence experimental; 454 [2], Illumina [2-3]

Mature sequence sme-miR-1c-3p

Accession MIMAT0003962
Previous IDssme-miR-1c
Sequence

48 - 

uggaauguugugaauaguguc

 - 68

Get sequence
Evidence experimental; cloned [1], Northern [1], 454 [2], Illumina [2]

References

1
PMID:16849698 "MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology" Palakodeti D, Smielewska M, Graveley BR RNA. 12:1640-1649(2006).
2
PMID:19564616 "High-resolution profiling and discovery of planarian small RNAs" Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N Proc Natl Acad Sci U S A. 106:11546-11551(2009).
3
PMID:19553344 "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea" Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR RNA. 15:1483-1491(2009).