miRBase entry: sme-mir-756

Stem-loop sme-mir-756


Accession
MI0005182
Description
Schmidtea mediterranea sme-mir-756 precursor miRNA


Sequence

uaaaaguugggauaaauCGAUAUGUGGUAAUUUGGAUGAcauaauuaacuuuguaaucuCAUCCAUCUUAUCAUUUAUCAAaauauucugacaug
.....(((((((((....((((.(((((((..(((((((.((((......))))....)))))))..))))))).))))....)))))))))...

Structure
uaaaa         aauC    U       UU       ---c    uu 
     guugggaua    GAUA GUGGUAA  UGGAUGA    auaa  a
     |||||||||    |||| |||||||  |||||||    ||||   
     cagucuuau    CUAU UACUAUU  ACCUACu    uguu  a
--gua         aaAA    U       CU       cuaa    uc 


Annotation confidence Not enough data
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Genome context
Contig217: 54473-54567 [-]

Database links

Mature sme-miR-756-5p

Accession MIMAT0004023
Description Schmidtea mediterranea sme-miR-756-5p mature miRNA
Sequence 18 - CGAUAUGUGGUAAUUUGGAUGA - 39
Evidence experimental
cloned [1], Northern [1], 454 [2], Illumina [2]

Mature sme-miR-756-3p

Accession MIMAT0012127
Description Schmidtea mediterranea sme-miR-756-3p mature miRNA
Sequence 60 - CAUCCAUCUUAUCAUUUAUCAA - 81
Evidence experimental
454 [2], Illumina [2-3]

References

  1. PubMed ID: 16849698
    MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
    "Palakodeti D, Smielewska M, Graveley BR"
    "RNA (2006) 12:1640-1649

  2. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  3. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491