Stem-loop mdo-mir-10b

Accession

MI0005274

Description

Monodelphis domestica mdo-mir-10b precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

491227 reads, 8857 reads per million, 5 experiments

cagaauguuauuacguugucuauauAUACCCUGUAGAACCGAAUUUGUgugguauuuacauagucacAGAUUCGAUUCUAGGGGAAUAuauggucgaugcaaaaacuucac
..(((.(((.((.(((((.((((((((.((((.(((((.((((((((((.(.(((....))).))))))))))).))))))))).)))))))).))))).)).))))))..

Structure

ca   u   a  a     u        A    G     C          u g   u 
  gaa guu uu cguug cuauauAU CCCU UAGAA CGAAUUUGUg g uau u
  ||| ||| || ||||| |||||||| |||| ||||| |||||||||| | |||  
  cuu caa aa guagc gguauAUA GGGG AUCUU GCUUAGAcac u aua a
ca   -   a  c     u        A    -     A          - g   c 

Annotation confidence Not enough data

Genome context

chr4: 187496024-187496134 [+]

Mature mdo-miR-10b-5p

• Accession: MIMAT0004090
• Description: Monodelphis domestica mdo-miR-10b-5p mature miRNA
• Sequence: 26 - AUACCCUGUAGAACCGAAUUUGU - 48
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-10b-3p

• Accession: MIMAT0026649
• Description: Monodelphis domestica mdo-miR-10b-3p mature miRNA
• Sequence: 68 - AGAUUCGAUUCUAGGGGAAUA - 88
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45