miRBase entry: mdo-mir-138

Stem-loop mdo-mir-138


Accession
MI0005300
Description
Monodelphis domestica mdo-mir-138 precursor miRNA
Gene family
MIPF0000075; mir-138


Sequence

22542 reads, 371 reads per million, 5 experiments
guugcugcAGCUGGUGUUGUGAAUCaggccgacaagcagcucauccuauuacccggcuauuucacuacaccaggguugcauca
(.(((.((..(((((((.(((((...(((((......................)))))..))))).))))))).)).))).).

Structure
- u   u  AG       U     UCa     acaagcagcu 
 g ugc gc  CUGGUGU GUGAA   ggccg          c
 | ||| ||  ||||||| |||||   |||||           
 c acg ug  gaccaca cacuu   ucggc          a
a u   u  -g       u     -ua     ccauuauccu 


Annotation confidence Not enough data
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Genome context
chr1: 447811941-447812023 [+]

Database links

Mature mdo-miR-138

Accession MIMAT0004111
Description Monodelphis domestica mdo-miR-138 mature miRNA
Sequence 9 - AGCUGGUGUUGUGAAUC - 25
Evidence experimental
Microarray [1], PCR [1]
Database links
Predicted targets

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72