Stem-loop mdo-mir-204

Accession

MI0005316

Description

Monodelphis domestica mdo-mir-204 precursor miRNA

Gene family

MIPF0000042; mir-204

Sequence

2945 reads, 50 reads per million, 5 experiments

caacugacuaugugaccugugggcUUCCCUUUGUCAUCCUAUGCCUggaaaucagaguggggcagggacagcaaagggaugcucagcugucgucuuc
.....(((.....(((...(((((.(((((((((..((((.(((((.(.........).)))))))))..))))))))).)))))...))))))...

Structure

caacu   uaugu   cug     U         CA    A     g aaa 
     gac     gac   ugggc UCCCUUUGU  UCCU UGCCU g   u
     |||     |||   ||||| |||||||||  |||| ||||| |   c
     cug     cug   acucg agggaaacg  aggg acggg u   a
--cuu   -----   ucg     u         ac    -     g gag 

Annotation confidence Not enough data

Genome context

chr1: 142496646-142496742 [-]

Mature mdo-miR-204

• Accession: MIMAT0004127
• Description: Monodelphis domestica mdo-miR-204 mature miRNA
• Sequence: 25 - UUCCCUUUGUCAUCCUAUGCCU - 46
• Evidence: experimental ; Microarray [1], PCR [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72