Stem-loop mdo-mir-449a

Accession

MI0005329

Description

Monodelphis domestica mdo-mir-449a precursor miRNA

Gene family

MIPF0000133; mir-449

Sequence

2939 reads, 344 reads per million, 5 experiments

ugugaugggaUGGCAGUGUAUUGUUAGCUGGUugacuaucugaacgugcCAGCUAACAUGCAACUGCUAUCccauugca
(((((((((((((((((((((.((((((((((...............)))))))))))))).)))))))))))))))))

Structure

                 -    U          ugacua 
ugugaugggaUGGCAGU GUAU GUUAGCUGGU      u
||||||||||||||||| |||| ||||||||||      c
acguuaccCUAUCGUCA CGUA CAAUCGACcg      u
                 A    -          ugcaag 

Annotation confidence Not enough data

Genome context

chr3: 17545606-17545684 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdo-mir-449a

Mature mdo-miR-449a-5p

• Accession: MIMAT0004140
• Description: Monodelphis domestica mdo-miR-449a-5p mature miRNA
• Sequence: 11 - UGGCAGUGUAUUGUUAGCUGGU - 32
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-449a-3p

• Accession: MIMAT0026685
• Description: Monodelphis domestica mdo-miR-449a-3p mature miRNA
• Sequence: 50 - CAGCUAACAUGCAACUGCUAUC - 71
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45