Stem-loop mdo-let-7a-2

Accession

MI0005330

Description

Monodelphis domestica mdo-let-7a-2 precursor miRNA

Sequence

2621839 reads, 45186 reads per million, 5 experiments

agguUGAGGUAGUAGGUUGUAUAGUUuagaauuacaucaagggagauaaCUGUACAGCCUCCUAGCUUUCCuu
(((..(((.(((.(((((((((((((.........(((......)))))))))))))))).))).))).))).

Structure

-   uU   G   U             uagaauuac   aa 
 agg  GAG UAG AGGUUGUAUAGUU         auc  g
 |||  ||| ||| |||||||||||||         |||   
 uCC  UUC AUC UCCGACAUGUCaa         uag  g
u   -U   G   C             ---------   ag 

Annotation confidence Medium

Genome context

chr4: 226185493-226185565 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-let-7a-2

Mature mdo-let-7a-5p

• Accession: MIMAT0004141
• Description: Monodelphis domestica mdo-let-7a-5p mature miRNA
• Sequence: 5 - UGAGGUAGUAGGUUGUAUAGUU - 26
• Evidence: experimental ; Microarray [1], PCR [1]

Mature mdo-let-7a-3p

• Accession: MIMAT0026686
• Description: Monodelphis domestica mdo-let-7a-3p mature miRNA
• Sequence: 50 - CUGUACAGCCUCCUAGCUUUCC - 71
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45