Stem-loop sequence mdo-mir-200b

Accession

MI0005345 (change log)

Description

Monodelphis domestica miR-200b stem-loop

Gene family

MIPF0000019; mir-8

Stem-loop

   --------c    -    ug     c      uggug 
5'          cauc uuac  ggcag auugga     u
            |||| ||||  ||||| ||||||     c
3'          guag aaug  ccguc uaaucu     u
   gggguagua    u    gu     a      uugug 

Deep sequencing

40192 reads, 520 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (MonDom5; GCF_000002295.2): chr4: 389166960-389167027 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mdo-mir-200b

• mdo-mir-200b: chr4: 389166960-389167027 [+]
• mdo-mir-200a: chr4: 389169611-389169696 [+]
• mdo-mir-429: chr4: 389175425-389175496 [+]

Database links

• EntrezGene:Mir200b
• miRBase Tracker:MI0005345

Mature sequence mdo-miR-200b-5p

• Accession: MIMAT0026700
• Sequence: 3 - aucuuacugggcagcauugga - 23
• Deep sequencing: 3731 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS0000607581_13616
• Predicted targets:
  • TargetScanVert:mdo-miR-200b-5p

Mature sequence mdo-miR-200b-3p

• Accession: MIMAT0004156
• Sequence: 39 - uaauacugccugguaaugauga - 60
• Deep sequencing: 36461 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000014D9C1_13616
• Predicted targets:
  • TargetScanVert:mdo-miR-200b-3p

References

1. PMID:17965199 "In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica" Devor EJ, Samollow PB J Hered. 99:66-72(2008).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).