Stem-loop mdo-let-7b

Accession

MI0005351

Description

Monodelphis domestica mdo-let-7b precursor miRNA

Sequence

2878178 reads, 53626.0 reads per million, 5 experiments

ggcggggUGAGGUAGUAGGUUGUGUGGUUucaggguagugauuuugccccaaucagaagauaaCUAUACAACCUACUGCCUUCCcuga
..(((((.(((((((((((((((((((((...((((((.....))))))..(((....))))))))))))))))))))))))))))).

Structure

gg     U                     ---------uca      u 
  cgggg GAGGUAGUAGGUUGUGUGGUU            ggguag g
  ||||| |||||||||||||||||||||            |||||| a
  gucCC UUCCGUCAUCCAACAUAUCaa            cccguu u
-a     -                     uagaagacuaac      u 

Annotation confidence High

Genome context

ref|NC_077234.2|: 12788543-12788630 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-let-7b

Mature mdo-let-7b-5p

• Accession: MIMAT0061143
• Description: Monodelphis domestica mdo-let-7b-5p mature miRNA
• Sequence: 8 - UGAGGUAGUAGGUUGUGUGGUU - 29
• Evidence: experimental ; Microarray [1], PCR [1]

Mature mdo-let-7b-3p

• Accession: MIMAT0004162
• Description: Monodelphis domestica mdo-let-7b-3p mature miRNA
• Sequence: 64 - CUAUACAACCUACUGCCUUCC - 84
• Evidence: experimental ; Microarray [1], PCR [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72