Stem-loop mdo-let-7b

Accession

MI0005351

Description

Monodelphis domestica mdo-let-7b precursor miRNA

Gene family

MIPF0000002; let-7

Sequence

2001090 reads, 34656 reads per million, 5 experiments

ggcggggUGAGGUAGUAGGUUGUGUGGUUucaggguagugauuuugccccaaucagaagauaacuauacaaccuacugccuucccuga
..(((((.(((((((((((((((((((((...((((((.....))))))..(((....))))))))))))))))))))))))))))).

Structure

gg     U                     ---------uca      u 
  cgggg GAGGUAGUAGGUUGUGUGGUU            ggguag g
  ||||| |||||||||||||||||||||            |||||| a
  guccc uuccgucauccaacauaucaa            cccguu u
-a     -                     uagaagacuaac      u 

Annotation confidence High

Genome context

chr8: 11048200-11048287 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-let-7b

Mature mdo-let-7b

• Accession: MIMAT0004162
• Description: Monodelphis domestica mdo-let-7b mature miRNA
• Sequence: 8 - UGAGGUAGUAGGUUGUGUGGUU - 29
• Evidence: experimental ; Microarray [1], PCR [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72